RegulonDB RegulonDB

CsgD Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
FliR FlgH MotB MotA CsgD YhbT FliM FliF FlgC nlpA_mRNA FlhA M-DAP_Ext cystine FlgB M-DAP FliJ ubiquinol fliAZ-tcyJ_mRNA nlpA FliE FlgF CsgG YccJ TcyL FliM Cys-Gly RpoA amino acids FlgB FliM FlhA djenkolate djenkolate_Ext csgDEFG_mRNA TcyN FlgI fliAZ-tcyJ FlhB DgcC FliR csgDEFG MotB FliQ iraP dgcC_mRNA FlgG iraP_mRNA This Gensor Unit is not yet available vitamin K2 FliI TcyN FliK FliO menaquinol CsgC FliF ala-glu FliJ FliH FliA cystine_Ext FliA FlhB FlgH lanthionine_Ext FliN FliZ dipeptide FliG FliQ alanine WrbA FliO FliP This Gensor Unit is not yet available PepD yccT_mRNA FlgI FliG CsgA_Ext CsgF fliFGHIJK fliE_mRNA guanosine-triphosphate glycine CsgE FlgF MotA wrbA-yccJ csgBAC L,L-homocystine_Ext RpoB fliFGHIJK_mRNA RpoC RpoC pepD_mRNA TcyJ lanthionine dgcC electron-transfer quinone FlgG ubiquinone NlpA L-glutamate FlgM FliN YhbS c-di-GMP yccT RpoA CsgE TcyL diphosphate CsgA CsgG FliG FliH CsgB IraP FliN TcyJ YccT cysteine_Ext This Gensor Unit is not yet available electron-transfer quinol This Gensor Unit is not yet available csgBAC_mRNA L,L-homocystine FliI fliE cysteine FlgC pepD FliP FliL wrbA-yccJ_mRNA FliE RpoB FlgN FliL


Gensor Unit       
Name: CsgD
Classification:
Groups: Cell motility
General function prediction only
Lipid transport and metabolism
Inorganic ion transport and metabolism
Transcription
Energy production and conversion
Signal transduction mechanisms
Amino acid transport and metabolism
Cell wall/membrane/envelope biogenesis
Gene Ontology Terms (GO): biological_process GO:0006754 - ATP biosynthetic process
GO:0015074 - DNA integration
GO:0006352 - DNA-templated transcription, initiation
GO:0015811 - L-cystine transport
GO:0006865 - amino acid transport
GO:1990000 - amyloid fibril formation
Read more >
cellular_component GO:0009288 - bacterial-type flagellum
GO:0009425 - bacterial-type flagellum basal body
GO:0009431 - bacterial-type flagellum basal body, MS ring
GO:0009424 - bacterial-type flagellum hook
GO:0009279 - cell outer membrane
GO:0005737 - cytoplasm
GO:0005829 - cytosol
Read more >
molecular_function GO:0005524 - ATP binding
GO:0016887 - ATPase activity
GO:0003677 - DNA binding
GO:0001216 - DNA-binding transcription activator activity
GO:0003700 - DNA-binding transcription factor activity
GO:0001217 - DNA-binding transcription repressor activity
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity
Read more >
Components:
  Function Name Type
  simple_molecule CsgA simple_molecule
  simple_molecule CsgA_Ext simple_molecule
  protein CsgB protein
  protein CsgC protein
  protein CsgD protein
  protein CsgE protein
  complex CsgE-CsgG complex
  protein CsgF protein
  protein CsgG protein
  simple_molecule Cys-Gly simple_molecule
  protein DgcC protein
  protein FlgB protein
  protein FlgC protein
  protein FlgF protein
  protein FlgG protein
  protein FlgH protein
  protein FlgI protein
  protein FlgM protein
  protein FlgN protein
  protein FlhA protein
  complex FlhA-FlhB-FliO-FliP-FliQ-FliR-FliH-FliI-FliJ complex
  protein FlhB protein
  protein FliA protein
  complex FliA-RpoB-RpoC-RpoA complex
  protein FliE protein
  protein FliF protein
  protein FliG protein
  complex FliG-FliM-FliN complex
  protein FliH protein
  protein FliI protein
  protein FliJ protein
  protein FliK protein
  protein FliL protein
  protein FliM protein
  protein FliN protein
  complex FliN-FliM-FliG-FlgH-MotA-MotB-FlgB-FlgC-FlgF-FlgG-FlgI-FliF-FliE-FliL complex
  protein FliO protein
  protein FliP protein
  protein FliQ protein
  protein FliR protein
  protein FliZ protein
  protein IraP protein
  simple_molecule L,L-homocystine simple_molecule
  simple_molecule L,L-homocystine_Ext simple_molecule
  simple_molecule L-glutamate simple_molecule
  simple_molecule M-DAP simple_molecule
  simple_molecule M-DAP_Ext simple_molecule
  protein MotA protein
  protein MotB protein
  protein NlpA protein
  protein PepD protein
  protein RpoA protein
  protein RpoB protein
  protein RpoC protein
  protein TcyJ protein
  protein TcyL protein
  protein TcyN protein
  complex TcyN-TcyL-TcyJ complex
  protein WrbA protein
  protein YccJ protein
  protein YccT protein
  protein YhbS protein
  protein YhbT protein
  simple_molecule ala-glu simple_molecule
  simple_molecule alanine simple_molecule
  simple_molecule amino acids simple_molecule
  simple_molecule c-di-GMP simple_molecule
  gene csgBAC gene
  RNA csgBAC_mRNA RNA
  gene csgDEFG gene
  RNA csgDEFG_mRNA RNA
  simple_molecule cysteine simple_molecule
  simple_molecule cysteine_Ext simple_molecule
  simple_molecule cystine simple_molecule
  simple_molecule cystine_Ext simple_molecule
  gene dgcC gene
  RNA dgcC_mRNA RNA
  simple_molecule dipeptide simple_molecule
  simple_molecule diphosphate simple_molecule
  simple_molecule djenkolate simple_molecule
  simple_molecule djenkolate_Ext simple_molecule
  simple_molecule electron-transfer quinol simple_molecule
  simple_molecule electron-transfer quinone simple_molecule
  gene flgMN gene
  RNA flgMN_mRNA RNA
  gene fliAZ-tcyJ gene
  RNA fliAZ-tcyJ_mRNA RNA
  gene fliE gene
  RNA fliE_mRNA RNA
  gene fliFGHIJK gene
  RNA fliFGHIJK_mRNA RNA
  simple_molecule glycine simple_molecule
  simple_molecule guanosine-triphosphate simple_molecule
  gene iraP gene
  RNA iraP_mRNA RNA
  simple_molecule lanthionine simple_molecule
  simple_molecule lanthionine_Ext simple_molecule
  simple_molecule menaquinol simple_molecule
  gene nlpA gene
  RNA nlpA_mRNA RNA
  gene pepD gene
  RNA pepD_mRNA RNA
  simple_molecule ubiquinol simple_molecule
  simple_molecule ubiquinone simple_molecule
  simple_molecule vitamin K2 simple_molecule
  gene wrbA-yccJ gene
  RNA wrbA-yccJ_mRNA RNA
  gene yccT gene
  RNA yccT_mRNA RNA
  gene yhbTS gene
  RNA yhbTS_mRNA RNA


Reactions       
Showing 61 reactions
CsgD csgBAC csgBAC_mRNA
Name: csgBAC -> csgBAC_mRNA
Description: Transcription of transcription unit csgBAC. Reaction activation by CsgD.
Type: transcription
Pathway Components: csgBAC - CsgD -> csgBAC_mRNA
Components:
Function Name Type
activator CsgD protein
reactant csgBAC gene
product csgBAC_mRNA RNA
CsgD csgDEFG csgDEFG_mRNA
Name: csgDEFG -> csgDEFG_mRNA
Description: Transcription of transcription unit csgDEFG. Reaction activation by CsgD.
Type: transcription
Pathway Components: csgDEFG - CsgD -> csgDEFG_mRNA
Components:
Function Name Type
activator CsgD protein
reactant csgDEFG gene
product csgDEFG_mRNA RNA
CsgD dgcC dgcC_mRNA
Name: dgcC -> dgcC_mRNA
Description: Transcription of transcription unit dgcC. Reaction activation by CsgD.
Type: transcription
Pathway Components: dgcC - CsgD -> dgcC_mRNA
Components:
Function Name Type
activator CsgD protein
reactant dgcC gene
product dgcC_mRNA RNA
CsgD iraP iraP_mRNA
Name: iraP -> iraP_mRNA
Description: Transcription of transcription unit iraP. Reaction activation by CsgD.
Type: transcription
Pathway Components: iraP - CsgD -> iraP_mRNA
Components:
Function Name Type
activator CsgD protein
reactant iraP gene
product iraP_mRNA RNA
CsgD nlpA nlpA_mRNA
Name: nlpA -> nlpA_mRNA
Description: Transcription of transcription unit nlpA. Reaction activation by CsgD.
Type: transcription
Pathway Components: nlpA - CsgD -> nlpA_mRNA
Components:
Function Name Type
activator CsgD protein
reactant nlpA gene
product nlpA_mRNA RNA
CsgD wrbA-yccJ wrbA-yccJ_mRNA
Name: wrbA-yccJ -> wrbA-yccJ_mRNA
Description: Transcription of transcription unit wrbA-yccJ. Reaction activation by CsgD.
Type: transcription
Pathway Components: wrbA-yccJ - CsgD -> wrbA-yccJ_mRNA
Components:
Function Name Type
activator CsgD protein
reactant wrbA-yccJ gene
product wrbA-yccJ_mRNA RNA
CsgD yccT yccT_mRNA
Name: yccT -> yccT_mRNA
Description: Transcription of transcription unit yccT. Reaction activation by CsgD.
Type: transcription
Pathway Components: yccT - CsgD -> yccT_mRNA
Components:
Function Name Type
activator CsgD protein
reactant yccT gene
product yccT_mRNA RNA
CsgD flgMN flgMN_mRNA
Name: flgMN -> flgMN_mRNA
Description: Transcription of transcription unit flgMN. Reaction inhibition by CsgD.
Type: transcription
Pathway Components: flgMN - CsgD -> flgMN_mRNA
Components:
Function Name Type
inhibitor CsgD protein
reactant flgMN gene
product flgMN_mRNA RNA
CsgD fliAZ-tcyJ fliAZ-tcyJ_mRNA
Name: fliAZ-tcyJ -> fliAZ-tcyJ_mRNA
Description: Transcription of transcription unit fliAZ-tcyJ. Reaction inhibition by CsgD.
Type: transcription
Pathway Components: fliAZ-tcyJ - CsgD -> fliAZ-tcyJ_mRNA
Components:
Function Name Type
inhibitor CsgD protein
reactant fliAZ-tcyJ gene
product fliAZ-tcyJ_mRNA RNA
CsgD fliE fliE_mRNA
Name: fliE -> fliE_mRNA
Description: Transcription of transcription unit fliE. Reaction inhibition by CsgD.
Type: transcription
Pathway Components: fliE - CsgD -> fliE_mRNA
Components:
Function Name Type
inhibitor CsgD protein
reactant fliE gene
product fliE_mRNA RNA
CsgD fliFGHIJK fliFGHIJK_mRNA
Name: fliFGHIJK -> fliFGHIJK_mRNA
Description: Transcription of transcription unit fliFGHIJK. Reaction inhibition by CsgD.
Type: transcription
Pathway Components: fliFGHIJK - CsgD -> fliFGHIJK_mRNA
Components:
Function Name Type
inhibitor CsgD protein
reactant fliFGHIJK gene
product fliFGHIJK_mRNA RNA
CsgD pepD pepD_mRNA
Name: pepD -> pepD_mRNA
Description: Transcription of transcription unit pepD. Reaction inhibition by CsgD.
Type: transcription
Pathway Components: pepD - CsgD -> pepD_mRNA
Components:
Function Name Type
inhibitor CsgD protein
reactant pepD gene
product pepD_mRNA RNA
CsgD yhbTS yhbTS_mRNA
Name: yhbTS -> yhbTS_mRNA
Description: Transcription of transcription unit yhbTS. Reaction inhibition by CsgD.
Type: transcription
Pathway Components: yhbTS - CsgD -> yhbTS_mRNA
Components:
Function Name Type
inhibitor CsgD protein
reactant yhbTS gene
product yhbTS_mRNA RNA
dgcC_mRNA DgcC
Name: dgcC_mRNA -> DgcC
Description: Translation of DgcC
Type: translation
Pathway Components: dgcC_mRNA -> DgcC
Components:
Function Name Type
product DgcC protein
reactant dgcC_mRNA RNA
DgcC c-di-GMP guanosine-triphosphate diphosphate + c-di-GMP
Name: guanosine-triphosphate -> diphosphate + c-di-GMP
Description: Reaction transforming guanosine-triphosphate into diphosphate, c-di-GMP
Type: state transition
Pathway Components: guanosine-triphosphate - DgcC - c-di-GMP -> diphosphate + c-di-GMP
Components:
Function Name Type
catalyzer DgcC protein
inhibitor c-di-GMP simple_molecule
product c-di-GMP simple_molecule
product diphosphate simple_molecule
reactant guanosine-triphosphate simple_molecule
nlpA_mRNA NlpA
Name: nlpA_mRNA -> NlpA
Description: Translation of NlpA
Type: translation
Pathway Components: nlpA_mRNA -> NlpA
Components:
Function Name Type
product NlpA protein
reactant nlpA_mRNA RNA
fliFGHIJK_mRNA FliF
Name: fliFGHIJK_mRNA -> FliF
Description: Translation of FliF
Type: translation
Pathway Components: fliFGHIJK_mRNA -> FliF
Components:
Function Name Type
product FliF protein
reactant fliFGHIJK_mRNA RNA
Protein Monomers Protein complex
Name: FliN + FlgH + FlgF + MotA + FlgG + FlgC + MotB + FlgB + FliF + FliL + FliE + FlgI + FliG + FliM -> FliN-FliM-FliG-FlgH-MotA-MotB-FlgB-FlgC-FlgF-FlgG-FlgI-FliF-FliE-FliL
Description: Reaction transforming FliN, FlgH, FlgF, MotA, FlgG, FlgC, MotB, FlgB, FliF, FliL, FliE, FlgI, FliG, FliM into FliN-FliM-FliG-FlgH-MotA-MotB-FlgB-FlgC-FlgF-FlgG-FlgI-FliF-FliE-FliL
Type: state transition
Pathway Components: FliN + FlgH + FlgF + MotA + FlgG + FlgC + MotB + FlgB + FliF + FliL + FliE + FlgI + FliG + FliM -> FliN-FliM-FliG-FlgH-MotA-MotB-FlgB-FlgC-FlgF-FlgG-FlgI-FliF-FliE-FliL
Components: Show/Hide Components Table
fliFGHIJK_mRNA FliG
Name: fliFGHIJK_mRNA -> FliG
Description: Translation of FliG
Type: translation
Pathway Components: fliFGHIJK_mRNA -> FliG
Components:
Function Name Type
product FliG protein
reactant fliFGHIJK_mRNA RNA
FliN + FliG + FliM FliG-FliM-FliN
Name: FliN + FliG + FliM -> FliG-FliM-FliN
Description: Reaction transforming FliN, FliG, FliM into FliG-FliM-FliN
Type: state transition
Pathway Components: FliN + FliG + FliM -> FliG-FliM-FliN
Components:
Function Name Type
reactant FliG protein
product FliG-FliM-FliN complex
reactant FliM protein
reactant FliN protein
fliFGHIJK_mRNA FliH
Name: fliFGHIJK_mRNA -> FliH
Description: Translation of FliH
Type: translation
Pathway Components: fliFGHIJK_mRNA -> FliH
Components:
Function Name Type
product FliH protein
reactant fliFGHIJK_mRNA RNA
Protein Monomers FlhA-FlhB-FliO-FliP-FliQ-FliR-FliH-FliI-FliJ
Name: FliP + FliQ + FlhA + FliR + FlhB + FliO + FliI + FliJ + FliH -> FlhA-FlhB-FliO-FliP-FliQ-FliR-FliH-FliI-FliJ
Description: Reaction transforming FliP, FliQ, FlhA, FliR, FlhB, FliO, FliI, FliJ, FliH into FlhA-FlhB-FliO-FliP-FliQ-FliR-FliH-FliI-FliJ
Type: state transition
Pathway Components: FliP + FliQ + FlhA + FliR + FlhB + FliO + FliI + FliJ + FliH -> FlhA-FlhB-FliO-FliP-FliQ-FliR-FliH-FliI-FliJ
Components: Show/Hide Components Table
fliFGHIJK_mRNA FliI
Name: fliFGHIJK_mRNA -> FliI
Description: Translation of FliI
Type: translation
Pathway Components: fliFGHIJK_mRNA -> FliI
Components:
Function Name Type
product FliI protein
reactant fliFGHIJK_mRNA RNA
fliFGHIJK_mRNA FliJ
Name: fliFGHIJK_mRNA -> FliJ
Description: Translation of FliJ
Type: translation
Pathway Components: fliFGHIJK_mRNA -> FliJ
Components:
Function Name Type
product FliJ protein
reactant fliFGHIJK_mRNA RNA
fliFGHIJK_mRNA FliK
Name: fliFGHIJK_mRNA -> FliK
Description: Translation of FliK
Type: translation
Pathway Components: fliFGHIJK_mRNA -> FliK
Components:
Function Name Type
product FliK protein
reactant fliFGHIJK_mRNA RNA
csgDEFG_mRNA CsgD
Name: csgDEFG_mRNA -> CsgD
Description: Translation of CsgD
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgD
Components:
Function Name Type
product CsgD protein
reactant csgDEFG_mRNA RNA
csgDEFG_mRNA CsgE
Name: csgDEFG_mRNA -> CsgE
Description: Translation of CsgE
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgE
Components:
Function Name Type
product CsgE protein
reactant csgDEFG_mRNA RNA
CsgE + CsgG CsgE-CsgG
Name: CsgE + CsgG -> CsgE-CsgG
Description: Reaction transforming CsgE, CsgG into CsgE-CsgG
Type: state transition
Pathway Components: CsgE + CsgG -> CsgE-CsgG
Components:
Function Name Type
reactant CsgE protein
product CsgE-CsgG complex
reactant CsgG protein
CsgE-CsgG CsgA_Ext CsgA
Name: CsgA_Ext -> CsgA
Description: Transport of CsgA_Ext through a bacterial membrane, leading to the presence of CsgA inside the cell.
Type: transport
Pathway Components: CsgA_Ext - CsgE-CsgG -> CsgA
Components:
Function Name Type
product CsgA simple_molecule
reactant CsgA_Ext simple_molecule
catalyzer CsgE-CsgG complex
csgDEFG_mRNA CsgF
Name: csgDEFG_mRNA -> CsgF
Description: Translation of CsgF
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgF
Components:
Function Name Type
product CsgF protein
reactant csgDEFG_mRNA RNA
csgDEFG_mRNA CsgG
Name: csgDEFG_mRNA -> CsgG
Description: Translation of CsgG
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgG
Components:
Function Name Type
product CsgG protein
reactant csgDEFG_mRNA RNA
wrbA-yccJ_mRNA WrbA
Name: wrbA-yccJ_mRNA -> WrbA
Description: Translation of WrbA
Type: translation
Pathway Components: wrbA-yccJ_mRNA -> WrbA
Components:
Function Name Type
product WrbA protein
reactant wrbA-yccJ_mRNA RNA
WrbA electron-transfer quinone electron-transfer quinol
Name: electron-transfer quinone -> electron-transfer quinol
Description: Reaction transforming electron-transfer quinone into electron-transfer quinol
Type: state transition
Pathway Components: electron-transfer quinone - WrbA -> electron-transfer quinol
Components:
Function Name Type
catalyzer WrbA protein
product electron-transfer quinol simple_molecule
reactant electron-transfer quinone simple_molecule
WrbA ubiquinone ubiquinol
Name: ubiquinone -> ubiquinol
Description: Reaction transforming ubiquinone into ubiquinol
Type: state transition
Pathway Components: ubiquinone - WrbA -> ubiquinol
Components:
Function Name Type
catalyzer WrbA protein
product ubiquinol simple_molecule
reactant ubiquinone simple_molecule
WrbA vitamin K2 menaquinol
Name: vitamin K2 -> menaquinol
Description: Reaction transforming vitamin K2 into menaquinol
Type: state transition
Pathway Components: vitamin K2 - WrbA -> menaquinol
Components:
Function Name Type
catalyzer WrbA protein
product menaquinol simple_molecule
reactant vitamin K2 simple_molecule
wrbA-yccJ_mRNA YccJ
Name: wrbA-yccJ_mRNA -> YccJ
Description: Translation of YccJ
Type: translation
Pathway Components: wrbA-yccJ_mRNA -> YccJ
Components:
Function Name Type
product YccJ protein
reactant wrbA-yccJ_mRNA RNA
csgBAC_mRNA CsgB
Name: csgBAC_mRNA -> CsgB
Description: Translation of CsgB
Type: translation
Pathway Components: csgBAC_mRNA -> CsgB
Components:
Function Name Type
product CsgB protein
reactant csgBAC_mRNA RNA
csgBAC_mRNA CsgA
Name: csgBAC_mRNA -> CsgA
Description: Translation of CsgA
Type: translation
Pathway Components: csgBAC_mRNA -> CsgA
Components:
Function Name Type
product CsgA simple_molecule
reactant csgBAC_mRNA RNA
csgBAC_mRNA CsgC
Name: csgBAC_mRNA -> CsgC
Description: Translation of CsgC
Type: translation
Pathway Components: csgBAC_mRNA -> CsgC
Components:
Function Name Type
product CsgC protein
reactant csgBAC_mRNA RNA
fliE_mRNA FliE
Name: fliE_mRNA -> FliE
Description: Translation of FliE
Type: translation
Pathway Components: fliE_mRNA -> FliE
Components:
Function Name Type
product FliE protein
reactant fliE_mRNA RNA
yhbTS_mRNA YhbT
Name: yhbTS_mRNA -> YhbT
Description: Translation of YhbT
Type: translation
Pathway Components: yhbTS_mRNA -> YhbT
Components:
Function Name Type
product YhbT protein
reactant yhbTS_mRNA RNA
yhbTS_mRNA YhbS
Name: yhbTS_mRNA -> YhbS
Description: Translation of YhbS
Type: translation
Pathway Components: yhbTS_mRNA -> YhbS
Components:
Function Name Type
product YhbS protein
reactant yhbTS_mRNA RNA
yccT_mRNA YccT
Name: yccT_mRNA -> YccT
Description: Translation of YccT
Type: translation
Pathway Components: yccT_mRNA -> YccT
Components:
Function Name Type
product YccT protein
reactant yccT_mRNA RNA
fliAZ-tcyJ_mRNA FliA
Name: fliAZ-tcyJ_mRNA -> FliA
Description: Translation of FliA
Type: translation
Pathway Components: fliAZ-tcyJ_mRNA -> FliA
Components:
Function Name Type
product FliA protein
reactant fliAZ-tcyJ_mRNA RNA
RpoC + RpoB + RpoA + FliA FliA-RpoB-RpoC-RpoA
Name: RpoC + RpoB + RpoA + FliA -> FliA-RpoB-RpoC-RpoA
Description: Reaction transforming RpoC, RpoB, RpoA, FliA into FliA-RpoB-RpoC-RpoA
Type: state transition
Pathway Components: RpoC + RpoB + RpoA + FliA -> FliA-RpoB-RpoC-RpoA
Components:
Function Name Type
reactant FliA protein
product FliA-RpoB-RpoC-RpoA complex
reactant RpoA protein
reactant RpoB protein
reactant RpoC protein
fliAZ-tcyJ_mRNA FliZ
Name: fliAZ-tcyJ_mRNA -> FliZ
Description: Translation of FliZ
Type: translation
Pathway Components: fliAZ-tcyJ_mRNA -> FliZ
Components:
Function Name Type
product FliZ protein
reactant fliAZ-tcyJ_mRNA RNA
fliAZ-tcyJ_mRNA TcyJ
Name: fliAZ-tcyJ_mRNA -> TcyJ
Description: Translation of TcyJ
Type: translation
Pathway Components: fliAZ-tcyJ_mRNA -> TcyJ
Components:
Function Name Type
product TcyJ protein
reactant fliAZ-tcyJ_mRNA RNA
TcyJ + TcyN + TcyL TcyN-TcyL-TcyJ
Name: TcyJ + TcyN + TcyL -> TcyN-TcyL-TcyJ
Description: Reaction transforming TcyJ, TcyN, TcyL into TcyN-TcyL-TcyJ
Type: state transition
Pathway Components: TcyJ + TcyN + TcyL -> TcyN-TcyL-TcyJ
Components:
Function Name Type
reactant TcyJ protein
reactant TcyL protein
reactant TcyN protein
product TcyN-TcyL-TcyJ complex
M-DAP TcyN-TcyL-TcyJ cysteine cystine_Ext cystine
Name: cystine_Ext -> cystine
Description: Transport of cystine_Ext through a bacterial membrane, leading to the presence of cystine inside the cell.
Type: transport
Pathway Components: cystine_Ext - TcyN-TcyL-TcyJ - M-DAP - cysteine -> cystine
Components:
Function Name Type
inhibitor M-DAP simple_molecule
catalyzer TcyN-TcyL-TcyJ complex
inhibitor cysteine simple_molecule
product cystine simple_molecule
reactant cystine_Ext simple_molecule
TcyN-TcyL-TcyJ cysteine_Ext cysteine
Name: cysteine_Ext -> cysteine
Description: Transport of cysteine_Ext through a bacterial membrane, leading to the presence of cysteine inside the cell.
Type: transport
Pathway Components: cysteine_Ext - TcyN-TcyL-TcyJ -> cysteine
Components:
Function Name Type
catalyzer TcyN-TcyL-TcyJ complex
product cysteine simple_molecule
reactant cysteine_Ext simple_molecule
TcyN-TcyL-TcyJ M-DAP_Ext M-DAP
Name: M-DAP_Ext -> M-DAP
Description: Transport of M-DAP_Ext through a bacterial membrane, leading to the presence of M-DAP inside the cell.
Type: transport
Pathway Components: M-DAP_Ext - TcyN-TcyL-TcyJ -> M-DAP
Components:
Function Name Type
product M-DAP simple_molecule
reactant M-DAP_Ext simple_molecule
catalyzer TcyN-TcyL-TcyJ complex
TcyN-TcyL-TcyJ djenkolate_Ext djenkolate
Name: djenkolate_Ext -> djenkolate
Description: Transport of djenkolate_Ext through a bacterial membrane, leading to the presence of djenkolate inside the cell.
Type: transport
Pathway Components: djenkolate_Ext - TcyN-TcyL-TcyJ -> djenkolate
Components:
Function Name Type
catalyzer TcyN-TcyL-TcyJ complex
product djenkolate simple_molecule
reactant djenkolate_Ext simple_molecule
TcyN-TcyL-TcyJ lanthionine_Ext lanthionine
Name: lanthionine_Ext -> lanthionine
Description: Transport of lanthionine_Ext through a bacterial membrane, leading to the presence of lanthionine inside the cell.
Type: transport
Pathway Components: lanthionine_Ext - TcyN-TcyL-TcyJ -> lanthionine
Components:
Function Name Type
catalyzer TcyN-TcyL-TcyJ complex
product lanthionine simple_molecule
reactant lanthionine_Ext simple_molecule
TcyN-TcyL-TcyJ L,L-homocystine_Ext L,L-homocystine
Name: L,L-homocystine_Ext -> L,L-homocystine
Description: Transport of L,L-homocystine_Ext through a bacterial membrane, leading to the presence of L,L-homocystine inside the cell.
Type: transport
Pathway Components: L,L-homocystine_Ext - TcyN-TcyL-TcyJ -> L,L-homocystine
Components:
Function Name Type
product L,L-homocystine simple_molecule
reactant L,L-homocystine_Ext simple_molecule
catalyzer TcyN-TcyL-TcyJ complex
iraP_mRNA IraP
Name: iraP_mRNA -> IraP
Description: Translation of IraP
Type: translation
Pathway Components: iraP_mRNA -> IraP
Components:
Function Name Type
product IraP protein
reactant iraP_mRNA RNA
flgMN_mRNA FlgM
Name: flgMN_mRNA -> FlgM
Description: Translation of FlgM
Type: translation
Pathway Components: flgMN_mRNA -> FlgM
Components:
Function Name Type
product FlgM protein
reactant flgMN_mRNA RNA
flgMN_mRNA FlgN
Name: flgMN_mRNA -> FlgN
Description: Translation of FlgN
Type: translation
Pathway Components: flgMN_mRNA -> FlgN
Components:
Function Name Type
product FlgN protein
reactant flgMN_mRNA RNA
pepD_mRNA PepD
Name: pepD_mRNA -> PepD
Description: Translation of PepD
Type: translation
Pathway Components: pepD_mRNA -> PepD
Components:
Function Name Type
product PepD protein
reactant pepD_mRNA RNA
PepD ala-glu L-glutamate + alanine
Name: ala-glu -> L-glutamate + alanine
Description: Reaction transforming ala-glu into L-glutamate, alanine
Type: state transition
Pathway Components: ala-glu - PepD -> L-glutamate + alanine
Components:
Function Name Type
product L-glutamate simple_molecule
catalyzer PepD protein
reactant ala-glu simple_molecule
product alanine simple_molecule
PepD dipeptide amino acids
Name: dipeptide -> amino acids
Description: Reaction transforming dipeptide into amino acids
Type: state transition
Pathway Components: dipeptide - PepD -> amino acids
Components:
Function Name Type
catalyzer PepD protein
product amino acids simple_molecule
reactant dipeptide simple_molecule
PepD Cys-Gly cysteine + glycine
Name: Cys-Gly -> cysteine + glycine
Description: Reaction transforming Cys-Gly into cysteine, glycine
Type: state transition
Pathway Components: Cys-Gly - PepD -> cysteine + glycine
Components:
Function Name Type
reactant Cys-Gly simple_molecule
catalyzer PepD protein
product cysteine simple_molecule
product glycine simple_molecule