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CdaR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
tRNA precursor with a 5' extension and a short 3' extension 5-KDG cdaR glucarate_Ext gudPXD 2-P-D-glycerate glycerate uncharged tRNA gudPXD_mRNA idarate GudP GudD mucate_Ext tRNA precursor with a short 3' extension RnpB GarL tartronate-S-ald garPLRK-rnpB tRNA-fragment GarD GarK GarR RNA:RnpB garPLRK-rnpB_mRNA cdaR_mRNA GudX mucate CdaR garD_mRNA GarP tRNA precursor with a 5' extension glycerate_Ext garD pyruvate glucarate 5-KDG mucate


Gensor Unit       
Name: CdaR
Classification:
Groups: Lipid transport and metabolism
Transcription
Carbohydrate transport and metabolism
Cell wall/membrane/envelope biogenesis
Gene Ontology Terms (GO): biological_process GO:0042838 - D-glucarate catabolic process
GO:0009063 - cellular amino acid catabolic process
GO:0044248 - cellular catabolic process
GO:0046392 - galactarate catabolic process
GO:0019394 - glucarate catabolic process
GO:0046487 - glyoxylate metabolic process
Read more >
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0016021 - integral component of membrane
GO:0016020 - membrane
GO:0005886 - plasma membrane
molecular_function GO:0008672 - 2-dehydro-3-deoxyglucarate aldolase activity
GO:0008679 - 2-hydroxy-3-oxopropionate reductase activity
GO:0005524 - ATP binding
GO:0003700 - DNA-binding transcription factor activity
GO:0051287 - NAD binding
GO:0016830 - carbon-carbon lyase activity
GO:0003824 - catalytic activity
Read more >
Components:
  Function Name Type
  simple_molecule 2-P-D-glycerate simple_molecule
  simple_molecule 5-KDG simple_molecule
  protein CdaR protein
  protein GarD protein
  protein GarK protein
  protein GarL protein
  protein GarP protein
  protein GarR protein
  protein GudD protein
  protein GudP protein
  protein GudX protein
  protein RNA:RnpB protein
  protein RnpB protein
  gene cdaR gene
  RNA cdaR_mRNA RNA
  gene garD gene
  RNA garD_mRNA RNA
  gene garPLRK-rnpB gene
  RNA garPLRK-rnpB_mRNA RNA
  simple_molecule glucarate simple_molecule
  simple_molecule glucarate_Ext simple_molecule
  simple_molecule glycerate simple_molecule
  simple_molecule glycerate_Ext simple_molecule
  gene gudPXD gene
  RNA gudPXD_mRNA RNA
  simple_molecule idarate simple_molecule
  simple_molecule mucate simple_molecule
  simple_molecule mucate_Ext simple_molecule
  simple_molecule pyruvate simple_molecule
  simple_molecule tRNA precursor with a 5' extension simple_molecule
  simple_molecule tRNA precursor with a 5' extension and a short 3' extension simple_molecule
  simple_molecule tRNA precursor with a short 3' extension simple_molecule
  simple_molecule tRNA-fragment simple_molecule
  simple_molecule tartronate-S-ald simple_molecule
  simple_molecule uncharged tRNA simple_molecule


Reactions       
Showing 27 reactions
CdaR cdaR cdaR_mRNA
Name: cdaR -> cdaR_mRNA
Description: Transcription of transcription unit cdaR. Reaction activation by CdaR.
Type: transcription
Pathway Components: cdaR - CdaR -> cdaR_mRNA
Components:
Function Name Type
activator CdaR protein
reactant cdaR gene
product cdaR_mRNA RNA
CdaR garD garD_mRNA
Name: garD -> garD_mRNA
Description: Transcription of transcription unit garD. Reaction activation by CdaR.
Type: transcription
Pathway Components: garD - CdaR -> garD_mRNA
Components:
Function Name Type
activator CdaR protein
reactant garD gene
product garD_mRNA RNA
CdaR garPLRK-rnpB garPLRK-rnpB_mRNA
Name: garPLRK-rnpB -> garPLRK-rnpB_mRNA
Description: Transcription of transcription unit garPLRK-rnpB. Reaction activation by CdaR.
Type: transcription
Pathway Components: garPLRK-rnpB - CdaR -> garPLRK-rnpB_mRNA
Components:
Function Name Type
activator CdaR protein
reactant garPLRK-rnpB gene
product garPLRK-rnpB_mRNA RNA
CdaR gudPXD gudPXD_mRNA
Name: gudPXD -> gudPXD_mRNA
Description: Transcription of transcription unit gudPXD. Reaction activation by CdaR.
Type: transcription
Pathway Components: gudPXD - CdaR -> gudPXD_mRNA
Components:
Function Name Type
activator CdaR protein
reactant gudPXD gene
product gudPXD_mRNA RNA
gudPXD_mRNA GudP
Name: gudPXD_mRNA -> GudP
Description: Translation of GudP
Type: translation
Pathway Components: gudPXD_mRNA -> GudP
Components:
Function Name Type
product GudP protein
reactant gudPXD_mRNA RNA
GarP GudP glycerate_Ext glycerate
Name: glycerate_Ext -> glycerate
Description: Transport of glycerate_Ext through a bacterial membrane, leading to the presence of glycerate inside the cell.
Type: transport
Pathway Components: glycerate_Ext - GarP - GudP -> glycerate
Components:
Function Name Type
catalyzer GarP protein
catalyzer GudP protein
product glycerate simple_molecule
reactant glycerate_Ext simple_molecule
GarP GudP glucarate_Ext glucarate
Name: glucarate_Ext -> glucarate
Description: Transport of glucarate_Ext through a bacterial membrane, leading to the presence of glucarate inside the cell.
Type: transport
Pathway Components: glucarate_Ext - GarP - GudP -> glucarate
Components:
Function Name Type
catalyzer GarP protein
catalyzer GudP protein
product glucarate simple_molecule
reactant glucarate_Ext simple_molecule
GarP GudP mucate_Ext mucate
Name: mucate_Ext -> mucate
Description: Transport of mucate_Ext through a bacterial membrane, leading to the presence of mucate inside the cell.
Type: transport
Pathway Components: mucate_Ext - GarP - GudP -> mucate
Components:
Function Name Type
catalyzer GarP protein
catalyzer GudP protein
product mucate simple_molecule
reactant mucate_Ext simple_molecule
gudPXD_mRNA GudX
Name: gudPXD_mRNA -> GudX
Description: Translation of GudX
Type: translation
Pathway Components: gudPXD_mRNA -> GudX
Components:
Function Name Type
product GudX protein
reactant gudPXD_mRNA RNA
gudPXD_mRNA GudD
Name: gudPXD_mRNA -> GudD
Description: Translation of GudD
Type: translation
Pathway Components: gudPXD_mRNA -> GudD
Components:
Function Name Type
product GudD protein
reactant gudPXD_mRNA RNA
GudD mucate glucarate 5-KDG
Name: glucarate -> 5-KDG
Description: Reaction transforming glucarate into 5-KDG
Type: state transition
Pathway Components: glucarate - GudD - mucate -> 5-KDG
Components:
Function Name Type
product 5-KDG simple_molecule
catalyzer GudD protein
reactant glucarate simple_molecule
inhibitor mucate simple_molecule
GudD idarate glucarate
Name: idarate -> glucarate
Description: Reaction transforming idarate into glucarate
Type: state transition
Pathway Components: idarate - GudD -> glucarate
Components:
Function Name Type
catalyzer GudD protein
product glucarate simple_molecule
reactant idarate simple_molecule
garPLRK-rnpB_mRNA GarP
Name: garPLRK-rnpB_mRNA -> GarP
Description: Translation of GarP
Type: translation
Pathway Components: garPLRK-rnpB_mRNA -> GarP
Components:
Function Name Type
product GarP protein
reactant garPLRK-rnpB_mRNA RNA
garPLRK-rnpB_mRNA GarL
Name: garPLRK-rnpB_mRNA -> GarL
Description: Translation of GarL
Type: translation
Pathway Components: garPLRK-rnpB_mRNA -> GarL
Components:
Function Name Type
product GarL protein
reactant garPLRK-rnpB_mRNA RNA
GarL glucarate mucate 5-KDG tartronate-S-ald + pyruvate
Name: 5-KDG -> tartronate-S-ald + pyruvate
Description: Reaction transforming 5-KDG into tartronate-S-ald, pyruvate
Type: state transition
Pathway Components: 5-KDG - GarL - glucarate - mucate -> tartronate-S-ald + pyruvate
Components:
Function Name Type
reactant 5-KDG simple_molecule
catalyzer GarL protein
inhibitor glucarate simple_molecule
inhibitor mucate simple_molecule
product pyruvate simple_molecule
product tartronate-S-ald simple_molecule
garPLRK-rnpB_mRNA GarR
Name: garPLRK-rnpB_mRNA -> GarR
Description: Translation of GarR
Type: translation
Pathway Components: garPLRK-rnpB_mRNA -> GarR
Components:
Function Name Type
product GarR protein
reactant garPLRK-rnpB_mRNA RNA
GarR tartronate-S-ald glycerate
Name: tartronate-S-ald -> glycerate
Description: Reaction transforming tartronate-S-ald into glycerate
Type: state transition
Pathway Components: tartronate-S-ald - GarR -> glycerate
Components:
Function Name Type
catalyzer GarR protein
product glycerate simple_molecule
reactant tartronate-S-ald simple_molecule
GarR glycerate tartronate-S-ald
Name: glycerate -> tartronate-S-ald
Description: Reaction transforming glycerate into tartronate-S-ald
Type: state transition
Pathway Components: glycerate - GarR -> tartronate-S-ald
Components:
Function Name Type
catalyzer GarR protein
reactant glycerate simple_molecule
product tartronate-S-ald simple_molecule
garPLRK-rnpB_mRNA GarK
Name: garPLRK-rnpB_mRNA -> GarK
Description: Translation of GarK
Type: translation
Pathway Components: garPLRK-rnpB_mRNA -> GarK
Components:
Function Name Type
product GarK protein
reactant garPLRK-rnpB_mRNA RNA
GarK glycerate 2-P-D-glycerate
Name: glycerate -> 2-P-D-glycerate
Description: Reaction transforming glycerate into 2-P-D-glycerate
Type: state transition
Pathway Components: glycerate - GarK -> 2-P-D-glycerate
Components:
Function Name Type
product 2-P-D-glycerate simple_molecule
catalyzer GarK protein
reactant glycerate simple_molecule
garPLRK-rnpB_mRNA RNA:RnpB
Name: garPLRK-rnpB_mRNA -> RNA:RnpB
Description: Translation of RNA:RnpB
Type: translation
Pathway Components: garPLRK-rnpB_mRNA -> RNA:RnpB
Components:
Function Name Type
product RNA:RnpB protein
reactant garPLRK-rnpB_mRNA RNA
RNA:RnpB RnpB tRNA precursor with a 5' extension uncharged tRNA + tRNA-fragment
Name: tRNA precursor with a 5' extension -> uncharged tRNA + tRNA-fragment
Description: Reaction transforming tRNA precursor with a 5' extension into uncharged tRNA, tRNA-fragment
Type: state transition
Pathway Components: tRNA precursor with a 5' extension - RNA:RnpB - RnpB -> uncharged tRNA + tRNA-fragment
Components:
Function Name Type
catalyzer RNA:RnpB protein
catalyzer RnpB protein
reactant tRNA precursor with a 5' extension simple_molecule
product tRNA-fragment simple_molecule
product uncharged tRNA simple_molecule
RNA:RnpB RnpB Reactants Products
Name: tRNA precursor with a 5' extension and a short 3' extension -> tRNA precursor with a short 3' extension + tRNA-fragment
Description: Reaction transforming tRNA precursor with a 5' extension and a short 3' extension into tRNA precursor with a short 3' extension, tRNA-fragment
Type: state transition
Pathway Components: tRNA precursor with a 5' extension and a short 3' extension - RNA:RnpB - RnpB -> tRNA precursor with a short 3' extension + tRNA-fragment
Components:
Function Name Type
catalyzer RNA:RnpB protein
catalyzer RnpB protein
reactant tRNA precursor with a 5' extension and a short 3' extension simple_molecule
product tRNA precursor with a short 3' extension simple_molecule
product tRNA-fragment simple_molecule
garPLRK-rnpB_mRNA RnpB
Name: garPLRK-rnpB_mRNA -> RnpB
Description: Translation of RnpB
Type: translation
Pathway Components: garPLRK-rnpB_mRNA -> RnpB
Components:
Function Name Type
product RnpB protein
reactant garPLRK-rnpB_mRNA RNA
garD_mRNA GarD
Name: garD_mRNA -> GarD
Description: Translation of GarD
Type: translation
Pathway Components: garD_mRNA -> GarD
Components:
Function Name Type
product GarD protein
reactant garD_mRNA RNA
GarD mucate 5-KDG
Name: mucate -> 5-KDG
Description: Reaction transforming mucate into 5-KDG
Type: state transition
Pathway Components: mucate - GarD -> 5-KDG
Components:
Function Name Type
product 5-KDG simple_molecule
catalyzer GarD protein
reactant mucate simple_molecule
cdaR_mRNA CdaR
Name: cdaR_mRNA -> CdaR
Description: Translation of CdaR
Type: translation
Pathway Components: cdaR_mRNA -> CdaR
Components:
Function Name Type
product CdaR protein
reactant cdaR_mRNA RNA



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