RegulonDB

Showing 29 reactions

Name:

phosphate + BasR -> BasR-phosphate

Description:

Reaction transforming phosphate, BasR into BasR-phosphate

Type:

state transition

Pathway Components:

phosphate + BasR -> BasR-phosphate

Components:

Function	Name	Type
reactant	BasR	protein
product	BasR-phosphate	complex
reactant	phosphate	simple_molecule

Name:

csgDEFG -> csgDEFG_mRNA

Description:

Transcription of transcription unit csgDEFG. Reaction activation by BasR-phosphate.

Type:

transcription

Pathway Components:

csgDEFG - BasR-phosphate -> csgDEFG_mRNA

Components:

Function	Name	Type
activator	BasR-phosphate	complex
reactant	csgDEFG	gene
product	csgDEFG_mRNA	RNA

Name:

cspI -> cspI_mRNA

Description:

Transcription of transcription unit cspI. Reaction activation by BasR-phosphate.

Type:

transcription

Pathway Components:

cspI - BasR-phosphate -> cspI_mRNA

Components:

Function	Name	Type
activator	BasR-phosphate	complex
reactant	cspI	gene
product	cspI_mRNA	RNA

Name:

dgkA -> dgkA_mRNA

Description:

Transcription of transcription unit dgkA. Reaction activation by BasR-phosphate.

Type:

transcription

Pathway Components:

dgkA - BasR-phosphate -> dgkA_mRNA

Components:

Function	Name	Type
activator	BasR-phosphate	complex
reactant	dgkA	gene
product	dgkA_mRNA	RNA

Name:

fimB -> fimB_mRNA

Description:

Transcription of transcription unit fimB. Reaction activation by BasR-phosphate.

Type:

transcription

Pathway Components:

fimB - BasR-phosphate -> fimB_mRNA

Components:

Function	Name	Type
activator	BasR-phosphate	complex
reactant	fimB	gene
product	fimB_mRNA	RNA

Name:

qseBC -> qseBC_mRNA

Description:

Transcription of transcription unit qseBC. Reaction activation by BasR-phosphate.

Type:

transcription

Pathway Components:

qseBC - BasR-phosphate -> qseBC_mRNA

Components:

Function	Name	Type
activator	BasR-phosphate	complex
reactant	qseBC	gene
product	qseBC_mRNA	RNA

Name:

tomB-hha -> tomB-hha_mRNA

Description:

Transcription of transcription unit tomB-hha. Reaction activation by BasR-phosphate.

Type:

transcription

Pathway Components:

tomB-hha - BasR-phosphate -> tomB-hha_mRNA

Components:

Function	Name	Type
activator	BasR-phosphate	complex
reactant	tomB-hha	gene
product	tomB-hha_mRNA	RNA

Name:

putA -> putA_mRNA

Description:

Transcription of transcription unit putA. Reaction inhibition by BasR-phosphate.

Type:

transcription

Pathway Components:

putA - BasR-phosphate -> putA_mRNA

Components:

Function	Name	Type
inhibitor	BasR-phosphate	complex
reactant	putA	gene
product	putA_mRNA	RNA

Name:

yrbL -> yrbL_mRNA

Description:

Transcription of transcription unit yrbL. Reaction inhibition by BasR-phosphate.

Type:

transcription

Pathway Components:

yrbL - BasR-phosphate -> yrbL_mRNA

Components:

Function	Name	Type
inhibitor	BasR-phosphate	complex
reactant	yrbL	gene
product	yrbL_mRNA	RNA

Name:

csgDEFG_mRNA -> CsgD

Description:

Translation of CsgD

Type:

translation

Pathway Components:

csgDEFG_mRNA -> CsgD

Components:

Function	Name	Type
product	CsgD	protein
reactant	csgDEFG_mRNA	RNA

Name:

csgDEFG_mRNA -> CsgE

Description:

Translation of CsgE

Type:

translation

Pathway Components:

csgDEFG_mRNA -> CsgE

Components:

Function	Name	Type
product	CsgE	protein
reactant	csgDEFG_mRNA	RNA

Name:

CsgG + CsgE -> CsgE-CsgG

Description:

Reaction transforming CsgG, CsgE into CsgE-CsgG

Type:

state transition

Pathway Components:

CsgG + CsgE -> CsgE-CsgG

Components:

Function	Name	Type
reactant	CsgE	protein
product	CsgE-CsgG	complex
reactant	CsgG	protein

Name:

CsgA_Ext -> CsgA

Description:

Transport of CsgA_Ext through a bacterial membrane, leading to the presence of CsgA inside the cell.

Type:

transport

Pathway Components:

CsgA_Ext - CsgE-CsgG -> CsgA

Components:

Function	Name	Type
product	CsgA	simple_molecule
reactant	CsgA_Ext	simple_molecule
catalyzer	CsgE-CsgG	complex

Name:

csgDEFG_mRNA -> CsgF

Description:

Translation of CsgF

Type:

translation

Pathway Components:

csgDEFG_mRNA -> CsgF

Components:

Function	Name	Type
product	CsgF	protein
reactant	csgDEFG_mRNA	RNA

Name:

csgDEFG_mRNA -> CsgG

Description:

Translation of CsgG

Type:

translation

Pathway Components:

csgDEFG_mRNA -> CsgG

Components:

Function	Name	Type
product	CsgG	protein
reactant	csgDEFG_mRNA	RNA

Name:

dgkA_mRNA -> DgkA

Description:

Translation of DgkA

Type:

translation

Pathway Components:

dgkA_mRNA -> DgkA

Components:

Function	Name	Type
product	DgkA	protein
reactant	dgkA_mRNA	RNA

Name:

D-1,2-diglyceride -> phosphatidate

Description:

Reaction transforming D-1,2-diglyceride into phosphatidate

Type:

state transition

Pathway Components:

D-1,2-diglyceride - DgkA - D-1,2-diglyceride -> phosphatidate

Components:

Function	Name	Type
inhibitor	D-1,2-diglyceride	simple_molecule
reactant	D-1,2-diglyceride	simple_molecule
catalyzer	DgkA	protein
product	phosphatidate	simple_molecule

Name:

qseBC_mRNA -> QseB

Description:

Translation of QseB

Type:

translation

Pathway Components:

qseBC_mRNA -> QseB

Components:

Function	Name	Type
product	QseB	protein
reactant	qseBC_mRNA	RNA

Name:

qseBC_mRNA -> QseC

Description:

Translation of QseC

Type:

translation

Pathway Components:

qseBC_mRNA -> QseC

Components:

Function	Name	Type
product	QseC	protein
reactant	qseBC_mRNA	RNA

Name:

qseBC_mRNA -> YgiY

Description:

Translation of YgiY

Type:

translation

Pathway Components:

qseBC_mRNA -> YgiY

Components:

Function	Name	Type
product	YgiY	protein
reactant	qseBC_mRNA	RNA

Name:

yrbL_mRNA -> YrbL

Description:

Translation of YrbL

Type:

translation

Pathway Components:

yrbL_mRNA -> YrbL

Components:

Function	Name	Type
product	YrbL	protein
reactant	yrbL_mRNA	RNA

Name:

putA_mRNA -> PutA

Description:

Translation of PutA

Type:

translation

Pathway Components:

putA_mRNA -> PutA

Components:

Function	Name	Type
product	PutA	protein
reactant	putA_mRNA	RNA

Name:

ubiquinone + proline -> pyrroline 5-carboxylate + ubiquinol

Description:

Reaction transforming ubiquinone, proline into pyrroline 5-carboxylate, ubiquinol

Type:

state transition

Pathway Components:

ubiquinone + proline - PutA -> pyrroline 5-carboxylate + ubiquinol

Components:

Function	Name	Type
catalyzer	PutA	protein
reactant	proline	simple_molecule
product	pyrroline 5-carboxylate	simple_molecule
product	ubiquinol	simple_molecule
reactant	ubiquinone	simple_molecule

Name:

glutamate-semialdehyde -> L-glutamate

Description:

Reaction transforming glutamate-semialdehyde into L-glutamate

Type:

state transition

Pathway Components:

glutamate-semialdehyde - PutA -> L-glutamate

Components:

Function	Name	Type
product	L-glutamate	simple_molecule
catalyzer	PutA	protein
reactant	glutamate-semialdehyde	simple_molecule

Name:

fimB_mRNA -> FimB

Description:

Translation of FimB

Type:

translation

Pathway Components:

fimB_mRNA -> FimB

Components:

Function	Name	Type
product	FimB	protein
reactant	fimB_mRNA	RNA

Name:

tomB-hha_mRNA -> TomB

Description:

Translation of TomB

Type:

translation

Pathway Components:

tomB-hha_mRNA -> TomB

Components:

Function	Name	Type
product	TomB	protein
reactant	tomB-hha_mRNA	RNA

Name:

tomB-hha_mRNA -> Hha

Description:

Translation of Hha

Type:

translation

Pathway Components:

tomB-hha_mRNA -> Hha

Components:

Function	Name	Type
product	Hha	protein
reactant	tomB-hha_mRNA	RNA

Name:

cspI_mRNA -> CspI

Description:

Translation of CspI

Type:

translation

Pathway Components:

cspI_mRNA -> CspI

Components:

Function	Name	Type
product	CspI	protein
reactant	cspI_mRNA	RNA

Name:

pyrroline 5-carboxylate -> glutamate-semialdehyde

Description:

Transformation of pyrroline 5-carboxylate into glutamate-semialdehyde by one or more reactions not shown.

Type:

complementary pathway reaction

Pathway Components:

pyrroline 5-carboxylate / SPONTPRO-RXN / glutamate-semialdehyde

Components:

Function	Name	Type
product	glutamate-semialdehyde	simple_molecule
reactant	pyrroline 5-carboxylate	simple_molecule

R1 R2 R3 R4 R5 R6 R7 R8 R9 R10 R11 R12 R13 R14 R15 R16 R17 R18 R19 R20 R21 R22 R23 R24 R25 R26 R27 R28 R29

Gensor Unit Map