Showing 45 reactions
ArgP
dapB
dapB_mRNA
Name:
dapB -> dapB_mRNA
Description:
Transcription of transcription unit dapB. Reaction activation by ArgP.
Type:
transcription
Pathway Components:
dapB - ArgP -> dapB_mRNA
Components:
Function
Name
Type
activator
ArgP
protein
reactant
dapB
gene
product
dapB_mRNA
RNA
ArgP
dapD
dapD_mRNA
Name:
dapD -> dapD_mRNA
Description:
Transcription of transcription unit dapD. Reaction activation by ArgP.
Type:
transcription
Pathway Components:
dapD - ArgP -> dapD_mRNA
Components:
Function
Name
Type
activator
ArgP
protein
reactant
dapD
gene
product
dapD_mRNA
RNA
ArgP
dnaAN-recF
dnaAN-recF_mRNA
Name:
dnaAN-recF -> dnaAN-recF_mRNA
Description:
Transcription of transcription unit dnaAN-recF. Reaction activation by ArgP.
Type:
transcription
Pathway Components:
dnaAN-recF - ArgP -> dnaAN-recF_mRNA
Components:
Function
Name
Type
activator
ArgP
protein
reactant
dnaAN-recF
gene
product
dnaAN-recF_mRNA
RNA
ArgP
gdhA
gdhA_mRNA
Name:
gdhA -> gdhA_mRNA
Description:
Transcription of transcription unit gdhA. Reaction activation by ArgP.
Type:
transcription
Pathway Components:
gdhA - ArgP -> gdhA_mRNA
Components:
Function
Name
Type
activator
ArgP
protein
reactant
gdhA
gene
product
gdhA_mRNA
RNA
ArgP
lysA
lysA_mRNA
Name:
lysA -> lysA_mRNA
Description:
Transcription of transcription unit lysA. Reaction activation by ArgP.
Type:
transcription
Pathway Components:
lysA - ArgP -> lysA_mRNA
Components:
Function
Name
Type
activator
ArgP
protein
reactant
lysA
gene
product
lysA_mRNA
RNA
ArgP
lysC
lysC_mRNA
Name:
lysC -> lysC_mRNA
Description:
Transcription of transcription unit lysC. Reaction activation by ArgP.
Type:
transcription
Pathway Components:
lysC - ArgP -> lysC_mRNA
Components:
Function
Name
Type
activator
ArgP
protein
reactant
lysC
gene
product
lysC_mRNA
RNA
ArgP
lysP
lysP_mRNA
Name:
lysP -> lysP_mRNA
Description:
Transcription of transcription unit lysP. Reaction activation by ArgP.
Type:
transcription
Pathway Components:
lysP - ArgP -> lysP_mRNA
Components:
Function
Name
Type
activator
ArgP
protein
reactant
lysP
gene
product
lysP_mRNA
RNA
ArgP
nrdAB-yfaE
nrdAB-yfaE_mRNA
Name:
nrdAB-yfaE -> nrdAB-yfaE_mRNA
Description:
Transcription of transcription unit nrdAB-yfaE. Reaction activation by ArgP.
Type:
transcription
Pathway Components:
nrdAB-yfaE - ArgP -> nrdAB-yfaE_mRNA
Components:
Function
Name
Type
activator
ArgP
protein
reactant
nrdAB-yfaE
gene
product
nrdAB-yfaE_mRNA
RNA
arginine + ArgP
ArgP-arginine
Name:
arginine + ArgP -> ArgP-arginine
Description:
Reaction transforming arginine, ArgP into ArgP-arginine
Type:
state transition
Pathway Components:
arginine + ArgP -> ArgP-arginine
Components:
Function
Name
Type
reactant
ArgP
protein
product
ArgP-arginine
complex
reactant
arginine
simple_molecule
ArgP-arginine
argO
argO_mRNA
Name:
argO -> argO_mRNA
Description:
Transcription of transcription unit argO. Reaction activation by ArgP-arginine.
Type:
transcription
Pathway Components:
argO - ArgP-arginine -> argO_mRNA
Components:
Function
Name
Type
activator
ArgP-arginine
complex
reactant
argO
gene
product
argO_mRNA
RNA
ArgP-arginine
argP
argP_mRNA
Name:
argP -> argP_mRNA
Description:
Transcription of transcription unit argP. Reaction inhibition by ArgP-arginine.
Type:
transcription
Pathway Components:
argP - ArgP-arginine -> argP_mRNA
Components:
Function
Name
Type
inhibitor
ArgP-arginine
complex
reactant
argP
gene
product
argP_mRNA
RNA
lysine + ArgP
ArgP-lysine
Name:
lysine + ArgP -> ArgP-lysine
Description:
Reaction transforming lysine, ArgP into ArgP-lysine
Type:
state transition
Pathway Components:
lysine + ArgP -> ArgP-lysine
Components:
Function
Name
Type
reactant
ArgP
protein
product
ArgP-lysine
complex
reactant
lysine
simple_molecule
lysA_mRNA
LysA
Name:
lysA_mRNA -> LysA
Description:
Translation of LysA
Type:
translation
Pathway Components:
lysA_mRNA -> LysA
Components:
Function
Name
Type
product
LysA
protein
reactant
lysA_mRNA
RNA
L-glutamate
LysA
lysine
M-DAP
lysine + CO2
Name:
M-DAP -> lysine + CO2
Description:
Reaction transforming M-DAP into lysine, CO2
Type:
state transition
Pathway Components:
M-DAP - LysA - L-glutamate - lysine -> lysine + CO2
Components:
Function
Name
Type
product
CO2
simple_molecule
inhibitor
L-glutamate
simple_molecule
catalyzer
LysA
protein
reactant
M-DAP
simple_molecule
inhibitor
lysine
simple_molecule
product
lysine
simple_molecule
gdhA_mRNA
GdhA
Name:
gdhA_mRNA -> GdhA
Description:
Translation of GdhA
Type:
translation
Pathway Components:
gdhA_mRNA -> GdhA
Components:
Function
Name
Type
product
GdhA
protein
reactant
gdhA_mRNA
RNA
GdhA
L-glutamate
ketoglutarate + ammonium
Name:
L-glutamate -> ketoglutarate + ammonium
Description:
Reaction transforming L-glutamate into ketoglutarate, ammonium
Type:
state transition
Pathway Components:
L-glutamate - GdhA -> ketoglutarate + ammonium
Components:
Function
Name
Type
catalyzer
GdhA
protein
reactant
L-glutamate
simple_molecule
product
ammonium
simple_molecule
product
ketoglutarate
simple_molecule
dapB_mRNA
DapB
Name:
dapB_mRNA -> DapB
Description:
Translation of DapB
Type:
translation
Pathway Components:
dapB_mRNA -> DapB
Components:
Function
Name
Type
product
DapB
protein
reactant
dapB_mRNA
RNA
DapB
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
tetrahydrodipicolinate
Name:
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate -> tetrahydrodipicolinate
Description:
Reaction transforming (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate into tetrahydrodipicolinate
Type:
state transition
Pathway Components:
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate - DapB -> tetrahydrodipicolinate
Components:
Function
Name
Type
reactant
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
simple_molecule
catalyzer
DapB
protein
product
tetrahydrodipicolinate
simple_molecule
nrdAB-yfaE_mRNA
NrdA
Name:
nrdAB-yfaE_mRNA -> NrdA
Description:
Translation of NrdA
Type:
translation
Pathway Components:
nrdAB-yfaE_mRNA -> NrdA
Components:
Function
Name
Type
product
NrdA
protein
reactant
nrdAB-yfaE_mRNA
RNA
NrdB + NrdA
NrdA-NrdB
Name:
NrdB + NrdA -> NrdA-NrdB
Description:
Reaction transforming NrdB, NrdA into NrdA-NrdB
Type:
state transition
Pathway Components:
NrdB + NrdA -> NrdA-NrdB
Components:
Function
Name
Type
reactant
NrdA
protein
product
NrdA-NrdB
complex
reactant
NrdB
protein
NrdA-NrdB
dCDP
nucleoside diphosphate + reduced thioredoxin
Products
Name:
nucleoside diphosphate + reduced thioredoxin -> deoxynucleoside diphosphate + thioredoxin disulfide
Description:
Reaction transforming nucleoside diphosphate, reduced thioredoxin into deoxynucleoside diphosphate, thioredoxin disulfide
Type:
state transition
Pathway Components:
nucleoside diphosphate + reduced thioredoxin - NrdA-NrdB - dCDP -> deoxynucleoside diphosphate + thioredoxin disulfide
Components:
Function
Name
Type
catalyzer
NrdA-NrdB
complex
inhibitor
dCDP
simple_molecule
product
deoxynucleoside diphosphate
simple_molecule
reactant
nucleoside diphosphate
simple_molecule
reactant
reduced thioredoxin
simple_molecule
product
thioredoxin disulfide
simple_molecule
NrdA-NrdB
cytidine-diphosphate + reduced thioredoxin
thioredoxin disulfide + dCDP
Name:
cytidine-diphosphate + reduced thioredoxin -> thioredoxin disulfide + dCDP
Description:
Reaction transforming cytidine-diphosphate, reduced thioredoxin into thioredoxin disulfide, dCDP
Type:
state transition
Pathway Components:
cytidine-diphosphate + reduced thioredoxin - NrdA-NrdB -> thioredoxin disulfide + dCDP
Components:
Function
Name
Type
catalyzer
NrdA-NrdB
complex
reactant
cytidine-diphosphate
simple_molecule
product
dCDP
simple_molecule
reactant
reduced thioredoxin
simple_molecule
product
thioredoxin disulfide
simple_molecule
NrdA-NrdB
reduced thioredoxin + uridine-diphosphate
thioredoxin disulfide + dUDP
Name:
reduced thioredoxin + uridine-diphosphate -> thioredoxin disulfide + dUDP
Description:
Reaction transforming reduced thioredoxin, uridine-diphosphate into thioredoxin disulfide, dUDP
Type:
state transition
Pathway Components:
reduced thioredoxin + uridine-diphosphate - NrdA-NrdB -> thioredoxin disulfide + dUDP
Components:
Function
Name
Type
catalyzer
NrdA-NrdB
complex
product
dUDP
simple_molecule
reactant
reduced thioredoxin
simple_molecule
product
thioredoxin disulfide
simple_molecule
reactant
uridine-diphosphate
simple_molecule
NrdA-NrdB
reduced thioredoxin
thioredoxin disulfide + dADP
Name:
reduced thioredoxin -> thioredoxin disulfide + dADP
Description:
Reaction transforming reduced thioredoxin into thioredoxin disulfide, dADP
Type:
state transition
Pathway Components:
reduced thioredoxin - NrdA-NrdB -> thioredoxin disulfide + dADP
Components:
Function
Name
Type
catalyzer
NrdA-NrdB
complex
product
dADP
simple_molecule
reactant
reduced thioredoxin
simple_molecule
product
thioredoxin disulfide
simple_molecule
NrdA-NrdB
guanosine-diphosphate + reduced thioredoxin
thioredoxin disulfide + dGDP
Name:
guanosine-diphosphate + reduced thioredoxin -> thioredoxin disulfide + dGDP
Description:
Reaction transforming guanosine-diphosphate, reduced thioredoxin into thioredoxin disulfide, dGDP
Type:
state transition
Pathway Components:
guanosine-diphosphate + reduced thioredoxin - NrdA-NrdB -> thioredoxin disulfide + dGDP
Components:
Function
Name
Type
catalyzer
NrdA-NrdB
complex
product
dGDP
simple_molecule
reactant
guanosine-diphosphate
simple_molecule
reactant
reduced thioredoxin
simple_molecule
product
thioredoxin disulfide
simple_molecule
nrdAB-yfaE_mRNA
NrdB
Name:
nrdAB-yfaE_mRNA -> NrdB
Description:
Translation of NrdB
Type:
translation
Pathway Components:
nrdAB-yfaE_mRNA -> NrdB
Components:
Function
Name
Type
product
NrdB
protein
reactant
nrdAB-yfaE_mRNA
RNA
nrdAB-yfaE_mRNA
YfaE
Name:
nrdAB-yfaE_mRNA -> YfaE
Description:
Translation of YfaE
Type:
translation
Pathway Components:
nrdAB-yfaE_mRNA -> YfaE
Components:
Function
Name
Type
product
YfaE
protein
reactant
nrdAB-yfaE_mRNA
RNA
dapD_mRNA
DapD
Name:
dapD_mRNA -> DapD
Description:
Translation of DapD
Type:
translation
Pathway Components:
dapD_mRNA -> DapD
Components:
Function
Name
Type
product
DapD
protein
reactant
dapD_mRNA
RNA
DapD
tetrahydrodipicolinate + suc-coa
Products
Name:
tetrahydrodipicolinate + suc-coa -> N-Succinyl-2-L-amino-6-oxoheptanedioate + coenzyme A
Description:
Reaction transforming tetrahydrodipicolinate, suc-coa into N-Succinyl-2-L-amino-6-oxoheptanedioate, coenzyme A
Type:
state transition
Pathway Components:
tetrahydrodipicolinate + suc-coa - DapD -> N-Succinyl-2-L-amino-6-oxoheptanedioate + coenzyme A
Components:
Function
Name
Type
catalyzer
DapD
protein
product
N-Succinyl-2-L-amino-6-oxoheptanedioate
simple_molecule
product
coenzyme A
simple_molecule
reactant
suc-coa
simple_molecule
reactant
tetrahydrodipicolinate
simple_molecule
lysP_mRNA
LysP
Name:
lysP_mRNA -> LysP
Description:
Translation of LysP
Type:
translation
Pathway Components:
lysP_mRNA -> LysP
Components:
Function
Name
Type
product
LysP
protein
reactant
lysP_mRNA
RNA
LysP
lysine_Ext
lysine
Name:
lysine_Ext -> lysine
Description:
Transport of lysine_Ext through a bacterial membrane, leading to the presence of lysine inside the cell.
Type:
transport
Pathway Components:
lysine_Ext - LysP -> lysine
Components:
Function
Name
Type
catalyzer
LysP
protein
product
lysine
simple_molecule
reactant
lysine_Ext
simple_molecule
lysC_mRNA
LysC
Name:
lysC_mRNA -> LysC
Description:
Translation of LysC
Type:
translation
Pathway Components:
lysC_mRNA -> LysC
Components:
Function
Name
Type
product
LysC
protein
reactant
lysC_mRNA
RNA
LysC
lysine
aspartate
aspartyl-4-P
Name:
aspartate -> aspartyl-4-P
Description:
Reaction transforming aspartate into aspartyl-4-P
Type:
state transition
Pathway Components:
aspartate - LysC - lysine -> aspartyl-4-P
Components:
Function
Name
Type
catalyzer
LysC
protein
reactant
aspartate
simple_molecule
product
aspartyl-4-P
simple_molecule
inhibitor
lysine
simple_molecule
argO_mRNA
ArgO
Name:
argO_mRNA -> ArgO
Description:
Translation of ArgO
Type:
translation
Pathway Components:
argO_mRNA -> ArgO
Components:
Function
Name
Type
product
ArgO
protein
reactant
argO_mRNA
RNA
ArgO
arginine_Ext
arginine
Name:
arginine_Ext -> arginine
Description:
Transport of arginine_Ext through a bacterial membrane, leading to the presence of arginine inside the cell.
Type:
transport
Pathway Components:
arginine_Ext - ArgO -> arginine
Components:
Function
Name
Type
catalyzer
ArgO
protein
product
arginine
simple_molecule
reactant
arginine_Ext
simple_molecule
ArgO
canavanine_Ext
canavanine
Name:
canavanine_Ext -> canavanine
Description:
Transport of canavanine_Ext through a bacterial membrane, leading to the presence of canavanine inside the cell.
Type:
transport
Pathway Components:
canavanine_Ext - ArgO -> canavanine
Components:
Function
Name
Type
catalyzer
ArgO
protein
product
canavanine
simple_molecule
reactant
canavanine_Ext
simple_molecule
argP_mRNA
ArgP
Name:
argP_mRNA -> ArgP
Description:
Translation of ArgP
Type:
translation
Pathway Components:
argP_mRNA -> ArgP
Components:
Function
Name
Type
product
ArgP
protein
reactant
argP_mRNA
RNA
dnaAN-recF_mRNA
DnaA
Name:
dnaAN-recF_mRNA -> DnaA
Description:
Translation of DnaA
Type:
translation
Pathway Components:
dnaAN-recF_mRNA -> DnaA
Components:
Function
Name
Type
product
DnaA
protein
reactant
dnaAN-recF_mRNA
RNA
dnaAN-recF_mRNA
DnaN
Name:
dnaAN-recF_mRNA -> DnaN
Description:
Translation of DnaN
Type:
translation
Pathway Components:
dnaAN-recF_mRNA -> DnaN
Components:
Function
Name
Type
product
DnaN
protein
reactant
dnaAN-recF_mRNA
RNA
Protein Monomers
HolE-DnaQ-DnaE-HolA-HolB-DnaX-DnaN-HolD-HolC
Name:
HolE + HolB + DnaX + HolA + DnaQ + DnaN + HolD + HolC + DnaE -> HolE-DnaQ-DnaE-HolA-HolB-DnaX-DnaN-HolD-HolC
Description:
Reaction transforming HolE, HolB, DnaX, HolA, DnaQ, DnaN, HolD, HolC, DnaE into HolE-DnaQ-DnaE-HolA-HolB-DnaX-DnaN-HolD-HolC
Type:
state transition
Pathway Components:
HolE + HolB + DnaX + HolA + DnaQ + DnaN + HolD + HolC + DnaE -> HolE-DnaQ-DnaE-HolA-HolB-DnaX-DnaN-HolD-HolC
Components:
Show/Hide Components Table
Function
Name
Type
reactant
DnaE
protein
reactant
DnaN
protein
reactant
DnaQ
protein
reactant
DnaX
protein
reactant
HolA
protein
reactant
HolB
protein
reactant
HolC
protein
reactant
HolD
protein
reactant
HolE
protein
product
HolE-DnaQ-DnaE-HolA-HolB-DnaX-DnaN-HolD-HolC
complex
dnaAN-recF_mRNA
RecF
Name:
dnaAN-recF_mRNA -> RecF
Description:
Translation of RecF
Type:
translation
Pathway Components:
dnaAN-recF_mRNA -> RecF
Components:
Function
Name
Type
product
RecF
protein
reactant
dnaAN-recF_mRNA
RNA
RecF + RecO + RecR
RecF-RecR-RecO
Name:
RecF + RecO + RecR -> RecF-RecR-RecO
Description:
Reaction transforming RecF, RecO, RecR into RecF-RecR-RecO
Type:
state transition
Pathway Components:
RecF + RecO + RecR -> RecF-RecR-RecO
Components:
Function
Name
Type
reactant
RecF
protein
product
RecF-RecR-RecO
complex
reactant
RecO
protein
reactant
RecR
protein
RecF-RecR-RecO
unstable RecA filament-DNA complex
stabilized RecA filament-DNA complex
Name:
unstable RecA filament-DNA complex -> stabilized RecA filament-DNA complex
Description:
Reaction transforming unstable RecA filament-DNA complex into stabilized RecA filament-DNA complex
Type:
state transition
Pathway Components:
unstable RecA filament-DNA complex - RecF-RecR-RecO -> stabilized RecA filament-DNA complex
Components:
Function
Name
Type
catalyzer
RecF-RecR-RecO
complex
product
stabilized RecA filament-DNA complex
simple_molecule
reactant
unstable RecA filament-DNA complex
simple_molecule
N-Succinyl-2-L-amino-6-oxoheptanedioate
M-DAP
Name:
N-Succinyl-2-L-amino-6-oxoheptanedioate -> M-DAP
Description:
Transformation of N-Succinyl-2-L-amino-6-oxoheptanedioate into M-DAP by one or more reactions not shown.
Type:
complementary pathway reaction
Pathway Components:
N-Succinyl-2-L-amino-6-oxoheptanedioate /
SUCCINYLDIAMINOPIMTRANS-RXN /
SUCCDIAMINOPIMDESUCC-RXN /
DIAMINOPIMEPIM-RXN /
M-DAP
Components:
Function
Name
Type
product
M-DAP
simple_molecule
reactant
N-Succinyl-2-L-amino-6-oxoheptanedioate
simple_molecule
aspartyl-4-P
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
Name:
aspartyl-4-P -> (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
Description:
Transformation of aspartyl-4-P into (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate by one or more reactions not shown.
Type:
complementary pathway reaction
Pathway Components:
aspartyl-4-P /
ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN /
DIHYDRODIPICSYN-RXN /
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
Components:
Function
Name
Type
product
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate
simple_molecule
reactant
aspartyl-4-P
simple_molecule