Showing 95 reactions
arginine + ArgR
ArgR-arginine
Name:
arginine + ArgR -> ArgR-arginine
Description:
Reaction transforming arginine, ArgR into ArgR-arginine
Type:
state transition
Pathway Components:
arginine + ArgR -> ArgR-arginine
Components:
Function
Name
Type
reactant
ArgR
protein
product
ArgR-arginine
complex
reactant
arginine
simple_molecule
ArgR-arginine
astCADBE
astCADBE_mRNA
Name:
astCADBE -> astCADBE_mRNA
Description:
Transcription of transcription unit astCADBE. Reaction activation by ArgR-arginine.
Type:
transcription
Pathway Components:
astCADBE - ArgR-arginine -> astCADBE_mRNA
Components:
Function
Name
Type
activator
ArgR-arginine
complex
reactant
astCADBE
gene
product
astCADBE_mRNA
RNA
ArgR-arginine
argA
argA_mRNA
Name:
argA -> argA_mRNA
Description:
Transcription of transcription unit argA. Reaction inhibition by ArgR-arginine.
Type:
transcription
Pathway Components:
argA - ArgR-arginine -> argA_mRNA
Components:
Function
Name
Type
inhibitor
ArgR-arginine
complex
reactant
argA
gene
product
argA_mRNA
RNA
ArgR-arginine
argCBH
argCBH_mRNA
Name:
argCBH -> argCBH_mRNA
Description:
Transcription of transcription unit argCBH. Reaction inhibition by ArgR-arginine.
Type:
transcription
Pathway Components:
argCBH - ArgR-arginine -> argCBH_mRNA
Components:
Function
Name
Type
inhibitor
ArgR-arginine
complex
reactant
argCBH
gene
product
argCBH_mRNA
RNA
ArgR-arginine
argD
argD_mRNA
Name:
argD -> argD_mRNA
Description:
Transcription of transcription unit argD. Reaction inhibition by ArgR-arginine.
Type:
transcription
Pathway Components:
argD - ArgR-arginine -> argD_mRNA
Components:
Function
Name
Type
inhibitor
ArgR-arginine
complex
reactant
argD
gene
product
argD_mRNA
RNA
ArgR-arginine
argE
argE_mRNA
Name:
argE -> argE_mRNA
Description:
Transcription of transcription unit argE. Reaction inhibition by ArgR-arginine.
Type:
transcription
Pathway Components:
argE - ArgR-arginine -> argE_mRNA
Components:
Function
Name
Type
inhibitor
ArgR-arginine
complex
reactant
argE
gene
product
argE_mRNA
RNA
ArgR-arginine
argF
argF_mRNA
Name:
argF -> argF_mRNA
Description:
Transcription of transcription unit argF. Reaction inhibition by ArgR-arginine.
Type:
transcription
Pathway Components:
argF - ArgR-arginine -> argF_mRNA
Components:
Function
Name
Type
inhibitor
ArgR-arginine
complex
reactant
argF
gene
product
argF_mRNA
RNA
ArgR-arginine
argG
argG_mRNA
Name:
argG -> argG_mRNA
Description:
Transcription of transcription unit argG. Reaction inhibition by ArgR-arginine.
Type:
transcription
Pathway Components:
argG - ArgR-arginine -> argG_mRNA
Components:
Function
Name
Type
inhibitor
ArgR-arginine
complex
reactant
argG
gene
product
argG_mRNA
RNA
ArgR-arginine
argI
argI_mRNA
Name:
argI -> argI_mRNA
Description:
Transcription of transcription unit argI. Reaction inhibition by ArgR-arginine.
Type:
transcription
Pathway Components:
argI - ArgR-arginine -> argI_mRNA
Components:
Function
Name
Type
inhibitor
ArgR-arginine
complex
reactant
argI
gene
product
argI_mRNA
RNA
ArgR-arginine
argR
argR_mRNA
Name:
argR -> argR_mRNA
Description:
Transcription of transcription unit argR. Reaction inhibition by ArgR-arginine.
Type:
transcription
Pathway Components:
argR - ArgR-arginine -> argR_mRNA
Components:
Function
Name
Type
inhibitor
ArgR-arginine
complex
reactant
argR
gene
product
argR_mRNA
RNA
ArgR-arginine
artJ
artJ_mRNA
Name:
artJ -> artJ_mRNA
Description:
Transcription of transcription unit artJ. Reaction inhibition by ArgR-arginine.
Type:
transcription
Pathway Components:
artJ - ArgR-arginine -> artJ_mRNA
Components:
Function
Name
Type
inhibitor
ArgR-arginine
complex
reactant
artJ
gene
product
artJ_mRNA
RNA
ArgR-arginine
artPIQM
artPIQM_mRNA
Name:
artPIQM -> artPIQM_mRNA
Description:
Transcription of transcription unit artPIQM. Reaction inhibition by ArgR-arginine.
Type:
transcription
Pathway Components:
artPIQM - ArgR-arginine -> artPIQM_mRNA
Components:
Function
Name
Type
inhibitor
ArgR-arginine
complex
reactant
artPIQM
gene
product
artPIQM_mRNA
RNA
ArgR-arginine
carAB
carAB_mRNA
Name:
carAB -> carAB_mRNA
Description:
Transcription of transcription unit carAB. Reaction inhibition by ArgR-arginine.
Type:
transcription
Pathway Components:
carAB - ArgR-arginine -> carAB_mRNA
Components:
Function
Name
Type
inhibitor
ArgR-arginine
complex
reactant
carAB
gene
product
carAB_mRNA
RNA
ArgR-arginine
gltBDF
gltBDF_mRNA
Name:
gltBDF -> gltBDF_mRNA
Description:
Transcription of transcription unit gltBDF. Reaction inhibition by ArgR-arginine.
Type:
transcription
Pathway Components:
gltBDF - ArgR-arginine -> gltBDF_mRNA
Components:
Function
Name
Type
inhibitor
ArgR-arginine
complex
reactant
gltBDF
gene
product
gltBDF_mRNA
RNA
ArgR-arginine
hisJQMP
hisJQMP_mRNA
Name:
hisJQMP -> hisJQMP_mRNA
Description:
Transcription of transcription unit hisJQMP. Reaction inhibition by ArgR-arginine.
Type:
transcription
Pathway Components:
hisJQMP - ArgR-arginine -> hisJQMP_mRNA
Components:
Function
Name
Type
inhibitor
ArgR-arginine
complex
reactant
hisJQMP
gene
product
hisJQMP_mRNA
RNA
ArgR-arginine
lysO
lysO_mRNA
Name:
lysO -> lysO_mRNA
Description:
Transcription of transcription unit lysO. Reaction inhibition by ArgR-arginine.
Type:
transcription
Pathway Components:
lysO - ArgR-arginine -> lysO_mRNA
Components:
Function
Name
Type
inhibitor
ArgR-arginine
complex
reactant
lysO
gene
product
lysO_mRNA
RNA
ArgR-arginine
metY
metY_mRNA
Name:
metY -> metY_mRNA
Description:
Transcription of transcription unit metY. Reaction inhibition by ArgR-arginine.
Type:
transcription
Pathway Components:
metY - ArgR-arginine -> metY_mRNA
Components:
Function
Name
Type
inhibitor
ArgR-arginine
complex
reactant
metY
gene
product
metY_mRNA
RNA
ArgR-arginine
metY-rimP-nusA-infB-rbfA-truB-rpsO-pnp
metY-rimP-nusA-infB-rbfA-truB-rpsO-pnp_mRNA
Name:
metY-rimP-nusA-infB-rbfA-truB-rpsO-pnp -> metY-rimP-nusA-infB-rbfA-truB-rpsO-pnp_mRNA
Description:
Transcription of transcription unit metY-rimP-nusA-infB-rbfA-truB-rpsO-pnp. Reaction inhibition by ArgR-arginine.
Type:
transcription
Pathway Components:
metY-rimP-nusA-infB-rbfA-truB-rpsO-pnp - ArgR-arginine -> metY-rimP-nusA-infB-rbfA-truB-rpsO-pnp_mRNA
Components:
artJ_mRNA
ArtJ
Name:
artJ_mRNA -> ArtJ
Description:
Translation of ArtJ
Type:
translation
Pathway Components:
artJ_mRNA -> ArtJ
Components:
Function
Name
Type
product
ArtJ
protein
reactant
artJ_mRNA
RNA
ArtP + ArtJ + ArtM + ArtQ
ArtJ-ArtQ-ArtM-ArtP
Name:
ArtP + ArtJ + ArtM + ArtQ -> ArtJ-ArtQ-ArtM-ArtP
Description:
Reaction transforming ArtP, ArtJ, ArtM, ArtQ into ArtJ-ArtQ-ArtM-ArtP
Type:
state transition
Pathway Components:
ArtP + ArtJ + ArtM + ArtQ -> ArtJ-ArtQ-ArtM-ArtP
Components:
Function
Name
Type
reactant
ArtJ
protein
product
ArtJ-ArtQ-ArtM-ArtP
complex
reactant
ArtM
protein
reactant
ArtP
protein
reactant
ArtQ
protein
ArtJ-ArtQ-ArtM-ArtP
HisQ-HisP-HisM-ArgT
arginine_Ext
arginine
Name:
arginine_Ext -> arginine
Description:
Transport of arginine_Ext through a bacterial membrane, leading to the presence of arginine inside the cell.
Type:
transport
Pathway Components:
arginine_Ext - ArtJ-ArtQ-ArtM-ArtP - HisQ-HisP-HisM-ArgT -> arginine
Components:
Function
Name
Type
catalyzer
ArtJ-ArtQ-ArtM-ArtP
complex
catalyzer
HisQ-HisP-HisM-ArgT
complex
product
arginine
simple_molecule
reactant
arginine_Ext
simple_molecule
gltBDF_mRNA
GltB
Name:
gltBDF_mRNA -> GltB
Description:
Translation of GltB
Type:
translation
Pathway Components:
gltBDF_mRNA -> GltB
Components:
Function
Name
Type
product
GltB
protein
reactant
gltBDF_mRNA
RNA
GltB + GltD
GltD-GltB
Name:
GltB + GltD -> GltD-GltB
Description:
Reaction transforming GltB, GltD into GltD-GltB
Type:
state transition
Pathway Components:
GltB + GltD -> GltD-GltB
Components:
Function
Name
Type
reactant
GltB
protein
reactant
GltD
protein
product
GltD-GltB
complex
gltBDF_mRNA
GltD
Name:
gltBDF_mRNA -> GltD
Description:
Translation of GltD
Type:
translation
Pathway Components:
gltBDF_mRNA -> GltD
Components:
Function
Name
Type
product
GltD
protein
reactant
gltBDF_mRNA
RNA
gltBDF_mRNA
GltF
Name:
gltBDF_mRNA -> GltF
Description:
Translation of GltF
Type:
translation
Pathway Components:
gltBDF_mRNA -> GltF
Components:
Function
Name
Type
product
GltF
protein
reactant
gltBDF_mRNA
RNA
argD_mRNA
ArgD
Name:
argD_mRNA -> ArgD
Description:
Translation of ArgD
Type:
translation
Pathway Components:
argD_mRNA -> ArgD
Components:
Function
Name
Type
product
ArgD
protein
reactant
argD_mRNA
RNA
ArgD
AstC
2-acetamido-5-oxopentanoate + L-glutamate
acetylornithine + ketoglutarate
Name:
2-acetamido-5-oxopentanoate + L-glutamate -> acetylornithine + ketoglutarate
Description:
Reaction transforming 2-acetamido-5-oxopentanoate, L-glutamate into acetylornithine, ketoglutarate
Type:
state transition
Pathway Components:
2-acetamido-5-oxopentanoate + L-glutamate - ArgD - AstC -> acetylornithine + ketoglutarate
Components:
Function
Name
Type
reactant
2-acetamido-5-oxopentanoate
simple_molecule
catalyzer
ArgD
protein
catalyzer
AstC
protein
reactant
L-glutamate
simple_molecule
product
acetylornithine
simple_molecule
product
ketoglutarate
simple_molecule
ArgD
ketoglutarate
ketoglutarate + L,L-SDAP
Products
Name:
ketoglutarate + L,L-SDAP -> N-Succinyl-2-L-amino-6-oxoheptanedioate + L-glutamate
Description:
Reaction transforming ketoglutarate, L,L-SDAP into N-Succinyl-2-L-amino-6-oxoheptanedioate, L-glutamate
Type:
state transition
Pathway Components:
ketoglutarate + L,L-SDAP - ArgD - ketoglutarate -> N-Succinyl-2-L-amino-6-oxoheptanedioate + L-glutamate
Components:
Function
Name
Type
catalyzer
ArgD
protein
reactant
L,L-SDAP
simple_molecule
product
L-glutamate
simple_molecule
product
N-Succinyl-2-L-amino-6-oxoheptanedioate
simple_molecule
inhibitor
ketoglutarate
simple_molecule
reactant
ketoglutarate
simple_molecule
argI_mRNA
ArgI
Name:
argI_mRNA -> ArgI
Description:
Translation of ArgI
Type:
translation
Pathway Components:
argI_mRNA -> ArgI
Components:
Function
Name
Type
product
ArgI
protein
reactant
argI_mRNA
RNA
ArgF
ArgI
carbamoyl-P + Ornithine
citrulline + phosphate
Name:
carbamoyl-P + Ornithine -> citrulline + phosphate
Description:
Reaction transforming carbamoyl-P, Ornithine into citrulline, phosphate
Type:
state transition
Pathway Components:
carbamoyl-P + Ornithine - ArgF - ArgI -> citrulline + phosphate
Components:
Function
Name
Type
catalyzer
ArgF
protein
catalyzer
ArgI
protein
reactant
Ornithine
simple_molecule
reactant
carbamoyl-P
simple_molecule
product
citrulline
simple_molecule
product
phosphate
simple_molecule
astCADBE_mRNA
AstC
Name:
astCADBE_mRNA -> AstC
Description:
Translation of AstC
Type:
translation
Pathway Components:
astCADBE_mRNA -> AstC
Components:
Function
Name
Type
product
AstC
protein
reactant
astCADBE_mRNA
RNA
AstC
N2-succinylornithine + ketoglutarate
N2-succinylglutamic-semialdehyde + L-glutamate
Name:
N2-succinylornithine + ketoglutarate -> N2-succinylglutamic-semialdehyde + L-glutamate
Description:
Reaction transforming N2-succinylornithine, ketoglutarate into N2-succinylglutamic-semialdehyde, L-glutamate
Type:
state transition
Pathway Components:
N2-succinylornithine + ketoglutarate - AstC -> N2-succinylglutamic-semialdehyde + L-glutamate
Components:
Function
Name
Type
catalyzer
AstC
protein
product
L-glutamate
simple_molecule
product
N2-succinylglutamic-semialdehyde
simple_molecule
reactant
N2-succinylornithine
simple_molecule
reactant
ketoglutarate
simple_molecule
astCADBE_mRNA
AstA
Name:
astCADBE_mRNA -> AstA
Description:
Translation of AstA
Type:
translation
Pathway Components:
astCADBE_mRNA -> AstA
Components:
Function
Name
Type
product
AstA
protein
reactant
astCADBE_mRNA
RNA
AstA
arginine + suc-coa
N2-succinylarginine + coenzyme A
Name:
arginine + suc-coa -> N2-succinylarginine + coenzyme A
Description:
Reaction transforming arginine, suc-coa into N2-succinylarginine, coenzyme A
Type:
state transition
Pathway Components:
arginine + suc-coa - AstA -> N2-succinylarginine + coenzyme A
Components:
Function
Name
Type
catalyzer
AstA
protein
product
N2-succinylarginine
simple_molecule
reactant
arginine
simple_molecule
product
coenzyme A
simple_molecule
reactant
suc-coa
simple_molecule
astCADBE_mRNA
AstD
Name:
astCADBE_mRNA -> AstD
Description:
Translation of AstD
Type:
translation
Pathway Components:
astCADBE_mRNA -> AstD
Components:
Function
Name
Type
product
AstD
protein
reactant
astCADBE_mRNA
RNA
AstD
N2-succinylglutamic-semialdehyde
N2-Succinyl-L-glutamate
Name:
N2-succinylglutamic-semialdehyde -> N2-Succinyl-L-glutamate
Description:
Reaction transforming N2-succinylglutamic-semialdehyde into N2-Succinyl-L-glutamate
Type:
state transition
Pathway Components:
N2-succinylglutamic-semialdehyde - AstD -> N2-Succinyl-L-glutamate
Components:
Function
Name
Type
catalyzer
AstD
protein
product
N2-Succinyl-L-glutamate
simple_molecule
reactant
N2-succinylglutamic-semialdehyde
simple_molecule
astCADBE_mRNA
AstB
Name:
astCADBE_mRNA -> AstB
Description:
Translation of AstB
Type:
translation
Pathway Components:
astCADBE_mRNA -> AstB
Components:
Function
Name
Type
product
AstB
protein
reactant
astCADBE_mRNA
RNA
AstB
N2-succinylarginine
N2-succinylornithine + ammonium + CO2
Name:
N2-succinylarginine -> N2-succinylornithine + ammonium + CO2
Description:
Reaction transforming N2-succinylarginine into N2-succinylornithine, ammonium , CO2
Type:
state transition
Pathway Components:
N2-succinylarginine - AstB -> N2-succinylornithine + ammonium + CO2
Components:
Function
Name
Type
catalyzer
AstB
protein
product
CO2
simple_molecule
reactant
N2-succinylarginine
simple_molecule
product
N2-succinylornithine
simple_molecule
product
ammonium
simple_molecule
astCADBE_mRNA
AstE
Name:
astCADBE_mRNA -> AstE
Description:
Translation of AstE
Type:
translation
Pathway Components:
astCADBE_mRNA -> AstE
Components:
Function
Name
Type
product
AstE
protein
reactant
astCADBE_mRNA
RNA
AstE
N2-Succinyl-L-glutamate
L-glutamate + succinate
Name:
N2-Succinyl-L-glutamate -> L-glutamate + succinate
Description:
Reaction transforming N2-Succinyl-L-glutamate into L-glutamate, succinate
Type:
state transition
Pathway Components:
N2-Succinyl-L-glutamate - AstE -> L-glutamate + succinate
Components:
Function
Name
Type
catalyzer
AstE
protein
product
L-glutamate
simple_molecule
reactant
N2-Succinyl-L-glutamate
simple_molecule
product
succinate
simple_molecule
argA_mRNA
ArgA
Name:
argA_mRNA -> ArgA
Description:
Translation of ArgA
Type:
translation
Pathway Components:
argA_mRNA -> ArgA
Components:
Function
Name
Type
product
ArgA
protein
reactant
argA_mRNA
RNA
ArgA
NAGS
arginine
citrulline
L-glutamate + acetyl-CoA
acetyl-L-glu + coenzyme A
Name:
L-glutamate + acetyl-CoA -> acetyl-L-glu + coenzyme A
Description:
Reaction transforming L-glutamate, acetyl-CoA into acetyl-L-glu, coenzyme A
Type:
state transition
Pathway Components:
L-glutamate + acetyl-CoA - ArgA - NAGS - arginine - citrulline -> acetyl-L-glu + coenzyme A
Components:
Function
Name
Type
catalyzer
ArgA
protein
reactant
L-glutamate
simple_molecule
catalyzer
NAGS
protein
reactant
acetyl-CoA
simple_molecule
product
acetyl-L-glu
simple_molecule
inhibitor
arginine
simple_molecule
inhibitor
citrulline
simple_molecule
product
coenzyme A
simple_molecule
argA_mRNA
NAGS
Name:
argA_mRNA -> NAGS
Description:
Translation of NAGS
Type:
translation
Pathway Components:
argA_mRNA -> NAGS
Components:
Function
Name
Type
product
NAGS
protein
reactant
argA_mRNA
RNA
carAB_mRNA
CarA
Name:
carAB_mRNA -> CarA
Description:
Translation of CarA
Type:
translation
Pathway Components:
carAB_mRNA -> CarA
Components:
Function
Name
Type
product
CarA
protein
reactant
carAB_mRNA
RNA
CarA + CarB
CarB-CarA
Name:
CarA + CarB -> CarB-CarA
Description:
Reaction transforming CarA, CarB into CarB-CarA
Type:
state transition
Pathway Components:
CarA + CarB -> CarB-CarA
Components:
Function
Name
Type
reactant
CarA
protein
reactant
CarB
protein
product
CarB-CarA
complex
CarB-CarA
Ornithine
ammonium
carbonate + glutamine
carbamoyl-P + L-glutamate + phosphate
Name:
carbonate + glutamine -> carbamoyl-P + L-glutamate + phosphate
Description:
Reaction transforming carbonate, glutamine into carbamoyl-P, L-glutamate , phosphate
Type:
state transition
Pathway Components:
carbonate + glutamine - CarB-CarA - Ornithine - ammonium -> carbamoyl-P + L-glutamate + phosphate
Components:
Function
Name
Type
catalyzer
CarB-CarA
complex
product
L-glutamate
simple_molecule
inhibitor
Ornithine
simple_molecule
inhibitor
ammonium
simple_molecule
product
carbamoyl-P
simple_molecule
reactant
carbonate
simple_molecule
reactant
glutamine
simple_molecule
product
phosphate
simple_molecule
CarB-CarA
glutamine
L-glutamate + ammonium
Name:
glutamine -> L-glutamate + ammonium
Description:
Reaction transforming glutamine into L-glutamate, ammonium
Type:
state transition
Pathway Components:
glutamine - CarB-CarA -> L-glutamate + ammonium
Components:
Function
Name
Type
catalyzer
CarB-CarA
complex
product
L-glutamate
simple_molecule
product
ammonium
simple_molecule
reactant
glutamine
simple_molecule
CarB-CarA
carbonate + ammonium
carbamoyl-P + phosphate
Name:
carbonate + ammonium -> carbamoyl-P + phosphate
Description:
Reaction transforming carbonate, ammonium into carbamoyl-P, phosphate
Type:
state transition
Pathway Components:
carbonate + ammonium - CarB-CarA -> carbamoyl-P + phosphate
Components:
Function
Name
Type
catalyzer
CarB-CarA
complex
reactant
ammonium
simple_molecule
product
carbamoyl-P
simple_molecule
reactant
carbonate
simple_molecule
product
phosphate
simple_molecule
carAB_mRNA
CarB
Name:
carAB_mRNA -> CarB
Description:
Translation of CarB
Type:
translation
Pathway Components:
carAB_mRNA -> CarB
Components:
Function
Name
Type
product
CarB
protein
reactant
carAB_mRNA
RNA
metY_mRNA
metY-tRNA
Name:
metY_mRNA -> metY-tRNA
Description:
Translation of metY-tRNA
Type:
translation
Pathway Components:
metY_mRNA -> metY-tRNA
Components:
Function
Name
Type
product
metY-tRNA
protein
reactant
metY_mRNA
RNA
metY_mRNA
RNA:L-methionyl-tRNAmetY
Name:
metY_mRNA -> RNA:L-methionyl-tRNAmetY
Description:
Translation of RNA:L-methionyl-tRNAmetY
Type:
translation
Pathway Components:
metY_mRNA -> RNA:L-methionyl-tRNAmetY
Components:
Function
Name
Type
product
RNA:L-methionyl-tRNAmetY
protein
reactant
metY_mRNA
RNA
metY_mRNA
RNA:N-formyl-L-methionyl-tRNAmetY
Name:
metY_mRNA -> RNA:N-formyl-L-methionyl-tRNAmetY
Description:
Translation of RNA:N-formyl-L-methionyl-tRNAmetY
Type:
translation
Pathway Components:
metY_mRNA -> RNA:N-formyl-L-methionyl-tRNAmetY
Components:
Function
Name
Type
product
RNA:N-formyl-L-methionyl-tRNAmetY
protein
reactant
metY_mRNA
RNA
hisJQMP_mRNA
HisJ
Name:
hisJQMP_mRNA -> HisJ
Description:
Translation of HisJ
Type:
translation
Pathway Components:
hisJQMP_mRNA -> HisJ
Components:
Function
Name
Type
product
HisJ
protein
reactant
hisJQMP_mRNA
RNA
HisJ + HisQ + HisP + HisM
HisP-HisM-HisQ-HisJ
Name:
HisJ + HisQ + HisP + HisM -> HisP-HisM-HisQ-HisJ
Description:
Reaction transforming HisJ, HisQ, HisP, HisM into HisP-HisM-HisQ-HisJ
Type:
state transition
Pathway Components:
HisJ + HisQ + HisP + HisM -> HisP-HisM-HisQ-HisJ
Components:
Function
Name
Type
reactant
HisJ
protein
reactant
HisM
protein
reactant
HisP
protein
product
HisP-HisM-HisQ-HisJ
complex
reactant
HisQ
protein