RegulonDB RegulonDB

AdiY Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
adiA gadAX_mRNA L-glutamate GltB AdiY CO2 arginine L-glutamate_Ext GadC GadB gltBDF gadAX GltD GltB GadA gltBDF_mRNA GltD GABA adiA_mRNA GadX gadBC GABA_Ext gadBC_mRNA agmatine GltF AdiA


Gensor Unit       
Name: AdiY
Classification:
Groups: Transcription
Amino acid transport and metabolism
Gene Ontology Terms (GO): biological_process GO:1902475 - L-alpha-amino acid transmembrane transport
GO:0097054 - L-glutamate biosynthetic process
GO:0003333 - amino acid transmembrane transport
GO:0006865 - amino acid transport
GO:0019676 - ammonia assimilation cycle
GO:0006527 - arginine catabolic process
Read more >
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0016021 - integral component of membrane
GO:0005887 - integral component of plasma membrane
GO:0016020 - membrane
GO:0030288 - outer membrane-bounded periplasmic space
GO:0005886 - plasma membrane
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molecular_function GO:0051538 - 3 iron, 4 sulfur cluster binding
GO:0051539 - 4 iron, 4 sulfur cluster binding
GO:0003677 - DNA binding
GO:0003700 - DNA-binding transcription factor activity
GO:0015179 - L-amino acid transmembrane transporter activity
GO:0015171 - amino acid transmembrane transporter activity
GO:0015297 - antiporter activity
Read more >
Components:
  Function Name Type
  protein AdiA protein
  protein AdiY protein
  simple_molecule CO2 simple_molecule
  simple_molecule GABA simple_molecule
  simple_molecule GABA_Ext simple_molecule
  protein GadA protein
  protein GadB protein
  protein GadC protein
  protein GadX protein
  protein GltB protein
  protein GltD protein
  complex GltD-GltB complex
  protein GltF protein
  simple_molecule L-glutamate simple_molecule
  simple_molecule L-glutamate_Ext simple_molecule
  gene adiA gene
  RNA adiA_mRNA RNA
  simple_molecule agmatine simple_molecule
  simple_molecule arginine simple_molecule
  gene gadAX gene
  RNA gadAX_mRNA RNA
  gene gadBC gene
  RNA gadBC_mRNA RNA
  gene gltBDF gene
  RNA gltBDF_mRNA RNA


Reactions       
Showing 16 reactions
AdiY adiA adiA_mRNA
Name: adiA -> adiA_mRNA
Description: Transcription of transcription unit adiA. Reaction activation by AdiY.
Type: transcription
Pathway Components: adiA - AdiY -> adiA_mRNA
Components:
Function Name Type
activator AdiY protein
reactant adiA gene
product adiA_mRNA RNA
AdiY gadAX gadAX_mRNA
Name: gadAX -> gadAX_mRNA
Description: Transcription of transcription unit gadAX. Reaction activation by AdiY.
Type: transcription
Pathway Components: gadAX - AdiY -> gadAX_mRNA
Components:
Function Name Type
activator AdiY protein
reactant gadAX gene
product gadAX_mRNA RNA
AdiY gadBC gadBC_mRNA
Name: gadBC -> gadBC_mRNA
Description: Transcription of transcription unit gadBC. Reaction activation by AdiY.
Type: transcription
Pathway Components: gadBC - AdiY -> gadBC_mRNA
Components:
Function Name Type
activator AdiY protein
reactant gadBC gene
product gadBC_mRNA RNA
AdiY gltBDF gltBDF_mRNA
Name: gltBDF -> gltBDF_mRNA
Description: Transcription of transcription unit gltBDF. Reaction activation by AdiY.
Type: transcription
Pathway Components: gltBDF - AdiY -> gltBDF_mRNA
Components:
Function Name Type
activator AdiY protein
reactant gltBDF gene
product gltBDF_mRNA RNA
gltBDF_mRNA GltB
Name: gltBDF_mRNA -> GltB
Description: Translation of GltB
Type: translation
Pathway Components: gltBDF_mRNA -> GltB
Components:
Function Name Type
product GltB protein
reactant gltBDF_mRNA RNA
GltD + GltB GltD-GltB
Name: GltD + GltB -> GltD-GltB
Description: Reaction transforming GltD, GltB into GltD-GltB
Type: state transition
Pathway Components: GltD + GltB -> GltD-GltB
Components:
Function Name Type
reactant GltB protein
reactant GltD protein
product GltD-GltB complex
gltBDF_mRNA GltD
Name: gltBDF_mRNA -> GltD
Description: Translation of GltD
Type: translation
Pathway Components: gltBDF_mRNA -> GltD
Components:
Function Name Type
product GltD protein
reactant gltBDF_mRNA RNA
gltBDF_mRNA GltF
Name: gltBDF_mRNA -> GltF
Description: Translation of GltF
Type: translation
Pathway Components: gltBDF_mRNA -> GltF
Components:
Function Name Type
product GltF protein
reactant gltBDF_mRNA RNA
gadBC_mRNA GadB
Name: gadBC_mRNA -> GadB
Description: Translation of GadB
Type: translation
Pathway Components: gadBC_mRNA -> GadB
Components:
Function Name Type
product GadB protein
reactant gadBC_mRNA RNA
GadA GadB L-glutamate GABA + CO2
Name: L-glutamate -> GABA + CO2
Description: Reaction transforming L-glutamate into GABA, CO2
Type: state transition
Pathway Components: L-glutamate - GadA - GadB -> GABA + CO2
Components:
Function Name Type
product CO2 simple_molecule
product GABA simple_molecule
catalyzer GadA protein
catalyzer GadB protein
reactant L-glutamate simple_molecule
gadBC_mRNA GadC
Name: gadBC_mRNA -> GadC
Description: Translation of GadC
Type: translation
Pathway Components: gadBC_mRNA -> GadC
Components:
Function Name Type
product GadC protein
reactant gadBC_mRNA RNA
GadC L-glutamate_Ext + GABA_Ext L-glutamate + GABA
Name: L-glutamate_Ext + GABA_Ext -> L-glutamate + GABA
Description: Transport of L-glutamate_Ext, GABA_Ext through a bacterial membrane, leading to the presence of L-glutamate, GABA inside the cell.
Type: transport
Pathway Components: L-glutamate_Ext + GABA_Ext - GadC -> L-glutamate + GABA
Components:
Function Name Type
product GABA simple_molecule
reactant GABA_Ext simple_molecule
catalyzer GadC protein
product L-glutamate simple_molecule
reactant L-glutamate_Ext simple_molecule
gadAX_mRNA GadA
Name: gadAX_mRNA -> GadA
Description: Translation of GadA
Type: translation
Pathway Components: gadAX_mRNA -> GadA
Components:
Function Name Type
product GadA protein
reactant gadAX_mRNA RNA
gadAX_mRNA GadX
Name: gadAX_mRNA -> GadX
Description: Translation of GadX
Type: translation
Pathway Components: gadAX_mRNA -> GadX
Components:
Function Name Type
product GadX protein
reactant gadAX_mRNA RNA
adiA_mRNA AdiA
Name: adiA_mRNA -> AdiA
Description: Translation of AdiA
Type: translation
Pathway Components: adiA_mRNA -> AdiA
Components:
Function Name Type
product AdiA protein
reactant adiA_mRNA RNA
AdiA arginine agmatine + CO2
Name: arginine -> agmatine + CO2
Description: Reaction transforming arginine into agmatine, CO2
Type: state transition
Pathway Components: arginine - AdiA -> agmatine + CO2
Components:
Function Name Type
catalyzer AdiA protein
product CO2 simple_molecule
product agmatine simple_molecule
reactant arginine simple_molecule



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