RegulonDB

Name:

aidB -> aidB_mRNA

Description:

Transcription of transcription unit aidB. Reaction activation by Ada.

Type:

transcription

Pathway Components:

aidB - Ada -> aidB_mRNA

Components:

Function	Name	Type
activator	Ada	protein
reactant	aidB	gene
product	aidB_mRNA	RNA

Name:

alkA -> alkA_mRNA

Description:

Transcription of transcription unit alkA. Reaction activation by Ada.

Type:

transcription

Pathway Components:

alkA - Ada -> alkA_mRNA

Components:

Function	Name	Type
activator	Ada	protein
reactant	alkA	gene
product	alkA_mRNA	RNA

Name:

methyl + Ada -> Ada-methyl

Description:

Reaction transforming methyl, Ada into Ada-methyl

Type:

state transition

Pathway Components:

methyl + Ada -> Ada-methyl

Components:

Function	Name	Type
reactant	Ada	protein
product	Ada-methyl	complex
reactant	methyl	simple_molecule

Name:

aidB_mRNA -> AidB

Description:

Translation of AidB

Type:

translation

Pathway Components:

aidB_mRNA -> AidB

Components:

Function	Name	Type
product	AidB	protein
reactant	aidB_mRNA	RNA

Name:

isovaleryl-CoA + oxidized ETF -> 3-methylcrotonyl-CoA + reduced ETF

Description:

Reaction transforming isovaleryl-CoA, oxidized ETF into 3-methylcrotonyl-CoA, reduced ETF

Type:

state transition

Pathway Components:

isovaleryl-CoA + oxidized ETF - AidB -> 3-methylcrotonyl-CoA + reduced ETF

Components:

Function	Name	Type
product	3-methylcrotonyl-CoA	simple_molecule
catalyzer	AidB	protein
reactant	isovaleryl-CoA	simple_molecule
reactant	oxidized ETF	simple_molecule
product	reduced ETF	simple_molecule

Name:

ada-alkB_mRNA -> Ada

Description:

Translation of Ada

Type:

translation

Pathway Components:

ada-alkB_mRNA -> Ada

Components:

Function	Name	Type
product	Ada	protein
reactant	ada-alkB_mRNA	RNA

Name:

DNA 6-O-methylguanine + peptide cysteine -> [protein]-S-methyl-L-cysteine + DNA guanine

Description:

Reaction transforming DNA 6-O-methylguanine, peptide cysteine into [protein]-S-methyl-L-cysteine, DNA guanine

Type:

state transition

Pathway Components:

DNA 6-O-methylguanine + peptide cysteine - Ada -> [protein]-S-methyl-L-cysteine + DNA guanine

Components:

Function	Name	Type
catalyzer	Ada	protein
reactant	DNA 6-O-methylguanine	simple_molecule
product	DNA guanine	simple_molecule
product	[protein]-S-methyl-L-cysteine	simple_molecule
reactant	peptide cysteine	simple_molecule

Name:

a modified nucleobase within DNA + peptide cysteine -> [protein]-S-methyl-L-cysteine + a-thymine-in-DNA

Description:

Reaction transforming a modified nucleobase within DNA, peptide cysteine into [protein]-S-methyl-L-cysteine, a-thymine-in-DNA

Type:

state transition

Pathway Components:

a modified nucleobase within DNA + peptide cysteine - Ada -> [protein]-S-methyl-L-cysteine + a-thymine-in-DNA

Components:

Function	Name	Type
catalyzer	Ada	protein
product	[protein]-S-methyl-L-cysteine	simple_molecule
reactant	a modified nucleobase within DNA	simple_molecule
product	a-thymine-in-DNA	simple_molecule
reactant	peptide cysteine	simple_molecule

Name:

a DNA containing Spmethyl phosphotriester + peptide cysteine -> a DNA without Spmethyl phosphotriester + [protein]-S-methyl-L-cysteine

Description:

Reaction transforming a DNA containing Spmethyl phosphotriester, peptide cysteine into a DNA without Spmethyl phosphotriester, [protein]-S-methyl-L-cysteine

Type:

state transition

Pathway Components:

a DNA containing Spmethyl phosphotriester + peptide cysteine - Ada -> a DNA without Spmethyl phosphotriester + [protein]-S-methyl-L-cysteine

Components:

Function	Name	Type
catalyzer	Ada	protein
product	[protein]-S-methyl-L-cysteine	simple_molecule
reactant	a DNA containing Spmethyl phosphotriester	simple_molecule
product	a DNA without Spmethyl phosphotriester	simple_molecule
reactant	peptide cysteine	simple_molecule

Name:

ada-alkB_mRNA -> AlkB

Description:

Translation of AlkB

Type:

translation

Pathway Components:

ada-alkB_mRNA -> AlkB

Components:

Function	Name	Type
product	AlkB	protein
reactant	ada-alkB_mRNA	RNA

Name:

an-Nsup1sup-methyladenine-in-DNA + ketoglutarate + oxygen -> DNA adenine + succinate + formol + CO2

Description:

Reaction transforming an-Nsup1sup-methyladenine-in-DNA, ketoglutarate, oxygen into DNA adenine, succinate , formol , CO2

Type:

state transition

Pathway Components:

an-Nsup1sup-methyladenine-in-DNA + ketoglutarate + oxygen - AlkB -> DNA adenine + succinate + formol + CO2

Components:

Function	Name	Type
catalyzer	AlkB	protein
product	CO2	simple_molecule
product	DNA adenine	simple_molecule
reactant	an-Nsup1sup-methyladenine-in-DNA	simple_molecule
product	formol	simple_molecule
reactant	ketoglutarate	simple_molecule
reactant	oxygen	simple_molecule
product	succinate	simple_molecule

Name:

an-Nsup3sup-methylcytosine-in-DNA + ketoglutarate + oxygen -> DNA dcytosine + succinate + formol + CO2

Description:

Reaction transforming an-Nsup3sup-methylcytosine-in-DNA, ketoglutarate, oxygen into DNA dcytosine, succinate , formol , CO2

Type:

state transition

Pathway Components:

an-Nsup3sup-methylcytosine-in-DNA + ketoglutarate + oxygen - AlkB -> DNA dcytosine + succinate + formol + CO2

Components:

Function	Name	Type
catalyzer	AlkB	protein
product	CO2	simple_molecule
product	DNA dcytosine	simple_molecule
reactant	an-Nsup3sup-methylcytosine-in-DNA	simple_molecule
product	formol	simple_molecule
reactant	ketoglutarate	simple_molecule
reactant	oxygen	simple_molecule
product	succinate	simple_molecule

Name:

an-iNisup1sup-ethyladenine-in-DNA + ketoglutarate + oxygen -> DNA adenine + succinate + ethanal + CO2

Description:

Reaction transforming an-iNisup1sup-ethyladenine-in-DNA, ketoglutarate, oxygen into DNA adenine, succinate , ethanal , CO2

Type:

state transition

Pathway Components:

an-iNisup1sup-ethyladenine-in-DNA + ketoglutarate + oxygen - AlkB -> DNA adenine + succinate + ethanal + CO2

Components:

Function	Name	Type
catalyzer	AlkB	protein
product	CO2	simple_molecule
product	DNA adenine	simple_molecule
reactant	an-iNisup1sup-ethyladenine-in-DNA	simple_molecule
product	ethanal	simple_molecule
reactant	ketoglutarate	simple_molecule
reactant	oxygen	simple_molecule
product	succinate	simple_molecule

Name:

1iNisup6sup-ethenoadenine-in-DNA + ketoglutarate + oxygen -> DNA adenine + succinate + glyoxal + CO2

Description:

Reaction transforming 1iNisup6sup-ethenoadenine-in-DNA, ketoglutarate, oxygen into DNA adenine, succinate , glyoxal , CO2

Type:

state transition

Pathway Components:

1iNisup6sup-ethenoadenine-in-DNA + ketoglutarate + oxygen - AlkB -> DNA adenine + succinate + glyoxal + CO2

Components:

Function	Name	Type
reactant	1iNisup6sup-ethenoadenine-in-DNA	simple_molecule
catalyzer	AlkB	protein
product	CO2	simple_molecule
product	DNA adenine	simple_molecule
product	glyoxal	simple_molecule
reactant	ketoglutarate	simple_molecule
reactant	oxygen	simple_molecule
product	succinate	simple_molecule

Name:

1-methyl-dATP + ketoglutarate + oxygen -> succinate + formol + dATP + CO2

Description:

Reaction transforming 1-methyl-dATP, ketoglutarate, oxygen into succinate, formol , dATP , CO2

Type:

state transition

Pathway Components:

1-methyl-dATP + ketoglutarate + oxygen - AlkB -> succinate + formol + dATP + CO2

Components:

Function	Name	Type
reactant	1-methyl-dATP	simple_molecule
catalyzer	AlkB	protein
product	CO2	simple_molecule
product	dATP	simple_molecule
product	formol	simple_molecule
reactant	ketoglutarate	simple_molecule
reactant	oxygen	simple_molecule
product	succinate	simple_molecule

Name:

ketoglutarate + 1-methyl-dAMP + oxygen -> succinate + formol + dAMP + CO2

Description:

Reaction transforming ketoglutarate, 1-methyl-dAMP, oxygen into succinate, formol , dAMP , CO2

Type:

state transition

Pathway Components:

ketoglutarate + 1-methyl-dAMP + oxygen - AlkB -> succinate + formol + dAMP + CO2

Components:

Function	Name	Type
reactant	1-methyl-dAMP	simple_molecule
catalyzer	AlkB	protein
product	CO2	simple_molecule
product	dAMP	simple_molecule
product	formol	simple_molecule
reactant	ketoglutarate	simple_molecule
reactant	oxygen	simple_molecule
product	succinate	simple_molecule

Name:

alkA_mRNA -> AlkA

Description:

Translation of AlkA

Type:

translation

Pathway Components:

alkA_mRNA -> AlkA

Components:

Function	Name	Type
product	AlkA	protein
reactant	alkA_mRNA	RNA

Name:

alkylated DNA -> DNA containing an AP site + base(2)

Description:

Reaction transforming alkylated DNA into DNA containing an AP site, base(2)

Type:

state transition

Pathway Components:

alkylated DNA - AlkA -> DNA containing an AP site + base(2)

Components:

Function	Name	Type
catalyzer	AlkA	protein
product	DNA containing an AP site	simple_molecule
reactant	alkylated DNA	simple_molecule
product	base(2)	simple_molecule

Gensor Unit Map