Showing 19 reactions
Ada
Ada
ada-alkB
ada-alkB_mRNA
Name:
ada-alkB -> ada-alkB_mRNA
Description:
Transcription of transcription unit ada-alkB. Reaction activation by Ada. Reaction inhibition by Ada.
Type:
transcription
Pathway Components:
ada-alkB - Ada - Ada -> ada-alkB_mRNA
Components:
Function
Name
Type
activator
Ada
protein
inhibitor
Ada
protein
reactant
ada-alkB
gene
product
ada-alkB_mRNA
RNA
Ada
aidB
aidB_mRNA
Name:
aidB -> aidB_mRNA
Description:
Transcription of transcription unit aidB. Reaction activation by Ada.
Type:
transcription
Pathway Components:
aidB - Ada -> aidB_mRNA
Components:
Function
Name
Type
activator
Ada
protein
reactant
aidB
gene
product
aidB_mRNA
RNA
Ada
alkA
alkA_mRNA
Name:
alkA -> alkA_mRNA
Description:
Transcription of transcription unit alkA. Reaction activation by Ada.
Type:
transcription
Pathway Components:
alkA - Ada -> alkA_mRNA
Components:
Function
Name
Type
activator
Ada
protein
reactant
alkA
gene
product
alkA_mRNA
RNA
methyl + Ada
Ada-methyl
Name:
methyl + Ada -> Ada-methyl
Description:
Reaction transforming methyl, Ada into Ada-methyl
Type:
state transition
Pathway Components:
methyl + Ada -> Ada-methyl
Components:
Function
Name
Type
reactant
Ada
protein
product
Ada-methyl
complex
reactant
methyl
simple_molecule
aidB_mRNA
AidB
Name:
aidB_mRNA -> AidB
Description:
Translation of AidB
Type:
translation
Pathway Components:
aidB_mRNA -> AidB
Components:
Function
Name
Type
product
AidB
protein
reactant
aidB_mRNA
RNA
AidB
isovaleryl-CoA + oxidized ETF
3-methylcrotonyl-CoA + reduced ETF
Name:
isovaleryl-CoA + oxidized ETF -> 3-methylcrotonyl-CoA + reduced ETF
Description:
Reaction transforming isovaleryl-CoA, oxidized ETF into 3-methylcrotonyl-CoA, reduced ETF
Type:
state transition
Pathway Components:
isovaleryl-CoA + oxidized ETF - AidB -> 3-methylcrotonyl-CoA + reduced ETF
Components:
Function
Name
Type
product
3-methylcrotonyl-CoA
simple_molecule
catalyzer
AidB
protein
reactant
isovaleryl-CoA
simple_molecule
reactant
oxidized ETF
simple_molecule
product
reduced ETF
simple_molecule
ada-alkB_mRNA
Ada
Name:
ada-alkB_mRNA -> Ada
Description:
Translation of Ada
Type:
translation
Pathway Components:
ada-alkB_mRNA -> Ada
Components:
Function
Name
Type
product
Ada
protein
reactant
ada-alkB_mRNA
RNA
Ada
DNA 6-O-methylguanine + peptide cysteine
[protein]-S-methyl-L-cysteine + DNA guanine
Name:
DNA 6-O-methylguanine + peptide cysteine -> [protein]-S-methyl-L-cysteine + DNA guanine
Description:
Reaction transforming DNA 6-O-methylguanine, peptide cysteine into [protein]-S-methyl-L-cysteine, DNA guanine
Type:
state transition
Pathway Components:
DNA 6-O-methylguanine + peptide cysteine - Ada -> [protein]-S-methyl-L-cysteine + DNA guanine
Components:
Function
Name
Type
catalyzer
Ada
protein
reactant
DNA 6-O-methylguanine
simple_molecule
product
DNA guanine
simple_molecule
product
[protein]-S-methyl-L-cysteine
simple_molecule
reactant
peptide cysteine
simple_molecule
Ada
Reactants
[protein]-S-methyl-L-cysteine + a-thymine-in-DNA
Name:
a modified nucleobase within DNA + peptide cysteine -> [protein]-S-methyl-L-cysteine + a-thymine-in-DNA
Description:
Reaction transforming a modified nucleobase within DNA, peptide cysteine into [protein]-S-methyl-L-cysteine, a-thymine-in-DNA
Type:
state transition
Pathway Components:
a modified nucleobase within DNA + peptide cysteine - Ada -> [protein]-S-methyl-L-cysteine + a-thymine-in-DNA
Components:
Function
Name
Type
catalyzer
Ada
protein
product
[protein]-S-methyl-L-cysteine
simple_molecule
reactant
a modified nucleobase within DNA
simple_molecule
product
a-thymine-in-DNA
simple_molecule
reactant
peptide cysteine
simple_molecule
Ada
Reactants
Products
Name:
a DNA containing Spmethyl phosphotriester + peptide cysteine -> a DNA without Spmethyl phosphotriester + [protein]-S-methyl-L-cysteine
Description:
Reaction transforming a DNA containing Spmethyl phosphotriester, peptide cysteine into a DNA without Spmethyl phosphotriester, [protein]-S-methyl-L-cysteine
Type:
state transition
Pathway Components:
a DNA containing Spmethyl phosphotriester + peptide cysteine - Ada -> a DNA without Spmethyl phosphotriester + [protein]-S-methyl-L-cysteine
Components:
Function
Name
Type
catalyzer
Ada
protein
product
[protein]-S-methyl-L-cysteine
simple_molecule
reactant
a DNA containing Spmethyl phosphotriester
simple_molecule
product
a DNA without Spmethyl phosphotriester
simple_molecule
reactant
peptide cysteine
simple_molecule
ada-alkB_mRNA
AlkB
Name:
ada-alkB_mRNA -> AlkB
Description:
Translation of AlkB
Type:
translation
Pathway Components:
ada-alkB_mRNA -> AlkB
Components:
Function
Name
Type
product
AlkB
protein
reactant
ada-alkB_mRNA
RNA
AlkB
Reactants
DNA adenine + succinate + formol + CO2
Name:
an-Nsup1sup-methyladenine-in-DNA + ketoglutarate + oxygen -> DNA adenine + succinate + formol + CO2
Description:
Reaction transforming an-Nsup1sup-methyladenine-in-DNA, ketoglutarate, oxygen into DNA adenine, succinate , formol , CO2
Type:
state transition
Pathway Components:
an-Nsup1sup-methyladenine-in-DNA + ketoglutarate + oxygen - AlkB -> DNA adenine + succinate + formol + CO2
Components:
Function
Name
Type
catalyzer
AlkB
protein
product
CO2
simple_molecule
product
DNA adenine
simple_molecule
reactant
an-Nsup1sup-methyladenine-in-DNA
simple_molecule
product
formol
simple_molecule
reactant
ketoglutarate
simple_molecule
reactant
oxygen
simple_molecule
product
succinate
simple_molecule
AlkB
Reactants
DNA dcytosine + succinate + formol + CO2
Name:
an-Nsup3sup-methylcytosine-in-DNA + ketoglutarate + oxygen -> DNA dcytosine + succinate + formol + CO2
Description:
Reaction transforming an-Nsup3sup-methylcytosine-in-DNA, ketoglutarate, oxygen into DNA dcytosine, succinate , formol , CO2
Type:
state transition
Pathway Components:
an-Nsup3sup-methylcytosine-in-DNA + ketoglutarate + oxygen - AlkB -> DNA dcytosine + succinate + formol + CO2
Components:
Function
Name
Type
catalyzer
AlkB
protein
product
CO2
simple_molecule
product
DNA dcytosine
simple_molecule
reactant
an-Nsup3sup-methylcytosine-in-DNA
simple_molecule
product
formol
simple_molecule
reactant
ketoglutarate
simple_molecule
reactant
oxygen
simple_molecule
product
succinate
simple_molecule
AlkB
Reactants
DNA adenine + succinate + ethanal + CO2
Name:
an-iNisup1sup-ethyladenine-in-DNA + ketoglutarate + oxygen -> DNA adenine + succinate + ethanal + CO2
Description:
Reaction transforming an-iNisup1sup-ethyladenine-in-DNA, ketoglutarate, oxygen into DNA adenine, succinate , ethanal , CO2
Type:
state transition
Pathway Components:
an-iNisup1sup-ethyladenine-in-DNA + ketoglutarate + oxygen - AlkB -> DNA adenine + succinate + ethanal + CO2
Components:
Function
Name
Type
catalyzer
AlkB
protein
product
CO2
simple_molecule
product
DNA adenine
simple_molecule
reactant
an-iNisup1sup-ethyladenine-in-DNA
simple_molecule
product
ethanal
simple_molecule
reactant
ketoglutarate
simple_molecule
reactant
oxygen
simple_molecule
product
succinate
simple_molecule
AlkB
Reactants
DNA adenine + succinate + glyoxal + CO2
Name:
1iNisup6sup-ethenoadenine-in-DNA + ketoglutarate + oxygen -> DNA adenine + succinate + glyoxal + CO2
Description:
Reaction transforming 1iNisup6sup-ethenoadenine-in-DNA, ketoglutarate, oxygen into DNA adenine, succinate , glyoxal , CO2
Type:
state transition
Pathway Components:
1iNisup6sup-ethenoadenine-in-DNA + ketoglutarate + oxygen - AlkB -> DNA adenine + succinate + glyoxal + CO2
Components:
Function
Name
Type
reactant
1iNisup6sup-ethenoadenine-in-DNA
simple_molecule
catalyzer
AlkB
protein
product
CO2
simple_molecule
product
DNA adenine
simple_molecule
product
glyoxal
simple_molecule
reactant
ketoglutarate
simple_molecule
reactant
oxygen
simple_molecule
product
succinate
simple_molecule
AlkB
1-methyl-dATP + ketoglutarate + oxygen
succinate + formol + dATP + CO2
Name:
1-methyl-dATP + ketoglutarate + oxygen -> succinate + formol + dATP + CO2
Description:
Reaction transforming 1-methyl-dATP, ketoglutarate, oxygen into succinate, formol , dATP , CO2
Type:
state transition
Pathway Components:
1-methyl-dATP + ketoglutarate + oxygen - AlkB -> succinate + formol + dATP + CO2
Components:
Function
Name
Type
reactant
1-methyl-dATP
simple_molecule
catalyzer
AlkB
protein
product
CO2
simple_molecule
product
dATP
simple_molecule
product
formol
simple_molecule
reactant
ketoglutarate
simple_molecule
reactant
oxygen
simple_molecule
product
succinate
simple_molecule
AlkB
ketoglutarate + 1-methyl-dAMP + oxygen
succinate + formol + dAMP + CO2
Name:
ketoglutarate + 1-methyl-dAMP + oxygen -> succinate + formol + dAMP + CO2
Description:
Reaction transforming ketoglutarate, 1-methyl-dAMP, oxygen into succinate, formol , dAMP , CO2
Type:
state transition
Pathway Components:
ketoglutarate + 1-methyl-dAMP + oxygen - AlkB -> succinate + formol + dAMP + CO2
Components:
Function
Name
Type
reactant
1-methyl-dAMP
simple_molecule
catalyzer
AlkB
protein
product
CO2
simple_molecule
product
dAMP
simple_molecule
product
formol
simple_molecule
reactant
ketoglutarate
simple_molecule
reactant
oxygen
simple_molecule
product
succinate
simple_molecule
alkA_mRNA
AlkA
Name:
alkA_mRNA -> AlkA
Description:
Translation of AlkA
Type:
translation
Pathway Components:
alkA_mRNA -> AlkA
Components:
Function
Name
Type
product
AlkA
protein
reactant
alkA_mRNA
RNA
AlkA
alkylated DNA
DNA containing an AP site + base(2)
Name:
alkylated DNA -> DNA containing an AP site + base(2)
Description:
Reaction transforming alkylated DNA into DNA containing an AP site, base(2)
Type:
state transition
Pathway Components:
alkylated DNA - AlkA -> DNA containing an AP site + base(2)
Components:
Function
Name
Type
catalyzer
AlkA
protein
product
DNA containing an AP site
simple_molecule
reactant
alkylated DNA
simple_molecule
product
base(2)
simple_molecule