RegulonDB

Name:

gfcA -> gfcA_mRNA

Description:

Transcription of transcription unit gfcA. Reaction inhibition by YjjQ.

Type:

transcription

Pathway Components:

gfcA - YjjQ -> gfcA_mRNA

Components:

Function	Name	Type
inhibitor	YjjQ	protein
reactant	gfcA	gene
product	gfcA_mRNA	RNA

Name:

ompC -> ompC_mRNA

Description:

Transcription of transcription unit ompC. Reaction inhibition by YjjQ.

Type:

transcription

Pathway Components:

ompC - YjjQ -> ompC_mRNA

Components:

Function	Name	Type
inhibitor	YjjQ	protein
reactant	ompC	gene
product	ompC_mRNA	RNA

Name:

ybhL -> ybhL_mRNA

Description:

Transcription of transcription unit ybhL. Reaction inhibition by YjjQ.

Type:

transcription

Pathway Components:

ybhL - YjjQ -> ybhL_mRNA

Components:

Function	Name	Type
inhibitor	YjjQ	protein
reactant	ybhL	gene
product	ybhL_mRNA	RNA

Name:

yfiR-dgcN-yfiB -> yfiR-dgcN-yfiB_mRNA

Description:

Transcription of transcription unit yfiR-dgcN-yfiB. Reaction inhibition by YjjQ.

Type:

transcription

Pathway Components:

yfiR-dgcN-yfiB - YjjQ -> yfiR-dgcN-yfiB_mRNA

Components:

Function	Name	Type
inhibitor	YjjQ	protein
reactant	yfiR-dgcN-yfiB	gene
product	yfiR-dgcN-yfiB_mRNA	RNA

Name:

ymiA-yciX -> ymiA-yciX_mRNA

Description:

Transcription of transcription unit ymiA-yciX. Reaction inhibition by YjjQ.

Type:

transcription

Pathway Components:

ymiA-yciX - YjjQ -> ymiA-yciX_mRNA

Components:

Function	Name	Type
inhibitor	YjjQ	protein
reactant	ymiA-yciX	gene
product	ymiA-yciX_mRNA	RNA

Name:

yfiR-dgcN-yfiB_mRNA -> YfiR

Description:

Translation of YfiR

Type:

translation

Pathway Components:

yfiR-dgcN-yfiB_mRNA -> YfiR

Components:

Function	Name	Type
product	YfiR	protein
reactant	yfiR-dgcN-yfiB_mRNA	RNA

Name:

yfiR-dgcN-yfiB_mRNA -> DgcN

Description:

Translation of DgcN

Type:

translation

Pathway Components:

yfiR-dgcN-yfiB_mRNA -> DgcN

Components:

Function	Name	Type
product	DgcN	protein
reactant	yfiR-dgcN-yfiB_mRNA	RNA

Name:

guanosine-triphosphate -> diphosphate + c-di-GMP

Description:

Reaction transforming guanosine-triphosphate into diphosphate, c-di-GMP

Type:

state transition

Pathway Components:

guanosine-triphosphate - DgcN - c-di-GMP -> diphosphate + c-di-GMP

Components:

Function	Name	Type
catalyzer	DgcN	protein
inhibitor	c-di-GMP	simple_molecule
product	c-di-GMP	simple_molecule
product	diphosphate	simple_molecule
reactant	guanosine-triphosphate	simple_molecule

Name:

yfiR-dgcN-yfiB_mRNA -> YfiB

Description:

Translation of YfiB

Type:

translation

Pathway Components:

yfiR-dgcN-yfiB_mRNA -> YfiB

Components:

Function	Name	Type
product	YfiB	protein
reactant	yfiR-dgcN-yfiB_mRNA	RNA

Name:

flhDC_mRNA -> FlhD

Description:

Translation of FlhD

Type:

translation

Pathway Components:

flhDC_mRNA -> FlhD

Components:

Function	Name	Type
product	FlhD	protein
reactant	flhDC_mRNA	RNA

Name:

FlhD + FlhC -> FlhD-FlhC

Description:

Reaction transforming FlhD, FlhC into FlhD-FlhC

Type:

state transition

Pathway Components:

FlhD + FlhC -> FlhD-FlhC

Components:

Function	Name	Type
reactant	FlhC	protein
reactant	FlhD	protein
product	FlhD-FlhC	complex

Name:

flhDC_mRNA -> FlhC

Description:

Translation of FlhC

Type:

translation

Pathway Components:

flhDC_mRNA -> FlhC

Components:

Function	Name	Type
product	FlhC	protein
reactant	flhDC_mRNA	RNA

Name:

ybhL_mRNA -> YbhL

Description:

Translation of YbhL

Type:

translation

Pathway Components:

ybhL_mRNA -> YbhL

Components:

Function	Name	Type
product	YbhL	protein
reactant	ybhL_mRNA	RNA

Name:

ompC_mRNA -> OmpC

Description:

Translation of OmpC

Type:

translation

Pathway Components:

ompC_mRNA -> OmpC

Components:

Function	Name	Type
product	OmpC	protein
reactant	ompC_mRNA	RNA

Name:

hydrophilic solute or ion 600 Da_Ext -> hydrophilic solute or ion 600 Da

Description:

Transport of hydrophilic solute or ion 600 Da_Ext through a bacterial membrane, leading to the presence of hydrophilic solute or ion 600 Da inside the cell.

Type:

transport

Pathway Components:

hydrophilic solute or ion 600 Da_Ext - OmpC -> hydrophilic solute or ion 600 Da

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	hydrophilic solute or ion 600 Da	simple_molecule
reactant	hydrophilic solute or ion 600 Da_Ext	simple_molecule

Name:

organophosphorus compound_Ext -> organophosphorus compound

Description:

Transport of organophosphorus compound_Ext through a bacterial membrane, leading to the presence of organophosphorus compound inside the cell.

Type:

transport

Pathway Components:

organophosphorus compound_Ext - OmpC -> organophosphorus compound

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	organophosphorus compound	simple_molecule
reactant	organophosphorus compound_Ext	simple_molecule

Name:

MCFA_Ext -> MCFA

Description:

Transport of MCFA_Ext through a bacterial membrane, leading to the presence of MCFA inside the cell.

Type:

transport

Pathway Components:

MCFA_Ext - OmpC -> MCFA

Components:

Function	Name	Type
product	MCFA	simple_molecule
reactant	MCFA_Ext	simple_molecule
catalyzer	OmpC	protein

Name:

caprate_Ext -> caprate

Description:

Transport of caprate_Ext through a bacterial membrane, leading to the presence of caprate inside the cell.

Type:

transport

Pathway Components:

caprate_Ext - OmpC -> caprate

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	caprate	simple_molecule
reactant	caprate_Ext	simple_molecule

Name:

glycoside_Ext -> glycoside

Description:

Transport of glycoside_Ext through a bacterial membrane, leading to the presence of glycoside inside the cell.

Type:

transport

Pathway Components:

glycoside_Ext - OmpC -> glycoside

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	glycoside	simple_molecule
reactant	glycoside_Ext	simple_molecule

Name:

sugar_Ext -> sugar

Description:

Transport of sugar_Ext through a bacterial membrane, leading to the presence of sugar inside the cell.

Type:

transport

Pathway Components:

sugar_Ext - OmpC -> sugar

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	sugar	simple_molecule
reactant	sugar_Ext	simple_molecule

Name:

beta-Neu5Ac_Ext -> beta-Neu5Ac

Description:

Transport of beta-Neu5Ac_Ext through a bacterial membrane, leading to the presence of beta-Neu5Ac inside the cell.

Type:

transport

Pathway Components:

beta-Neu5Ac_Ext - OmpC -> beta-Neu5Ac

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	beta-Neu5Ac	simple_molecule
reactant	beta-Neu5Ac_Ext	simple_molecule

Name:

N-acetylneuraminate_Ext -> N-acetylneuraminate

Description:

Transport of N-acetylneuraminate_Ext through a bacterial membrane, leading to the presence of N-acetylneuraminate inside the cell.

Type:

transport

Pathway Components:

N-acetylneuraminate_Ext - OmpC -> N-acetylneuraminate

Components:

Function	Name	Type
product	N-acetylneuraminate	simple_molecule
reactant	N-acetylneuraminate_Ext	simple_molecule
catalyzer	OmpC	protein

Name:

sugar phosphate_Ext -> sugar phosphate

Description:

Transport of sugar phosphate_Ext through a bacterial membrane, leading to the presence of sugar phosphate inside the cell.

Type:

transport

Pathway Components:

sugar phosphate_Ext - OmpC -> sugar phosphate

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	sugar phosphate	simple_molecule
reactant	sugar phosphate_Ext	simple_molecule

Name:

monocarboxylate_Ext -> monocarboxylate

Description:

Transport of monocarboxylate_Ext through a bacterial membrane, leading to the presence of monocarboxylate inside the cell.

Type:

transport

Pathway Components:

monocarboxylate_Ext - OmpC -> monocarboxylate

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	monocarboxylate	simple_molecule
reactant	monocarboxylate_Ext	simple_molecule

Name:

aromatic compound_Ext -> aromatic compound

Description:

Transport of aromatic compound_Ext through a bacterial membrane, leading to the presence of aromatic compound inside the cell.

Type:

transport

Pathway Components:

aromatic compound_Ext - OmpC -> aromatic compound

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	aromatic compound	simple_molecule
reactant	aromatic compound_Ext	simple_molecule

Name:

enterobactin_Ext -> enterobactin

Description:

Transport of enterobactin_Ext through a bacterial membrane, leading to the presence of enterobactin inside the cell.

Type:

transport

Pathway Components:

enterobactin_Ext - OmpC -> enterobactin

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	enterobactin	simple_molecule
reactant	enterobactin_Ext	simple_molecule

Name:

trisaccharide_Ext -> trisaccharide

Description:

Transport of trisaccharide_Ext through a bacterial membrane, leading to the presence of trisaccharide inside the cell.

Type:

transport

Pathway Components:

trisaccharide_Ext - OmpC -> trisaccharide

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	trisaccharide	simple_molecule
reactant	trisaccharide_Ext	simple_molecule

Name:

disaccharide_Ext -> disaccharide

Description:

Transport of disaccharide_Ext through a bacterial membrane, leading to the presence of disaccharide inside the cell.

Type:

transport

Pathway Components:

disaccharide_Ext - OmpC -> disaccharide

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	disaccharide	simple_molecule
reactant	disaccharide_Ext	simple_molecule

Name:

maltose_Ext -> maltose

Description:

Transport of maltose_Ext through a bacterial membrane, leading to the presence of maltose inside the cell.

Type:

transport

Pathway Components:

maltose_Ext - OmpC -> maltose

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	maltose	simple_molecule
reactant	maltose_Ext	simple_molecule

Name:

chitobiose_Ext -> chitobiose

Description:

Transport of chitobiose_Ext through a bacterial membrane, leading to the presence of chitobiose inside the cell.

Type:

transport

Pathway Components:

chitobiose_Ext - OmpC -> chitobiose

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	chitobiose	simple_molecule
reactant	chitobiose_Ext	simple_molecule

Name:

oligopeptide_Ext -> oligopeptide

Description:

Transport of oligopeptide_Ext through a bacterial membrane, leading to the presence of oligopeptide inside the cell.

Type:

transport

Pathway Components:

oligopeptide_Ext - OmpC -> oligopeptide

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	oligopeptide	simple_molecule
reactant	oligopeptide_Ext	simple_molecule

Name:

nucleotide_Ext -> nucleotide

Description:

Transport of nucleotide_Ext through a bacterial membrane, leading to the presence of nucleotide inside the cell.

Type:

transport

Pathway Components:

nucleotide_Ext - OmpC -> nucleotide

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	nucleotide	simple_molecule
reactant	nucleotide_Ext	simple_molecule

Name:

nucleotide sugar_Ext -> nucleotide sugar

Description:

Transport of nucleotide sugar_Ext through a bacterial membrane, leading to the presence of nucleotide sugar inside the cell.

Type:

transport

Pathway Components:

nucleotide sugar_Ext - OmpC -> nucleotide sugar

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	nucleotide sugar	simple_molecule
reactant	nucleotide sugar_Ext	simple_molecule

Name:

nucleoside_Ext -> nucleoside

Description:

Transport of nucleoside_Ext through a bacterial membrane, leading to the presence of nucleoside inside the cell.

Type:

transport

Pathway Components:

nucleoside_Ext - OmpC -> nucleoside

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	nucleoside	simple_molecule
reactant	nucleoside_Ext	simple_molecule

Name:

RCHO_Ext -> RCHO

Description:

Transport of RCHO_Ext through a bacterial membrane, leading to the presence of RCHO inside the cell.

Type:

transport

Pathway Components:

RCHO_Ext - OmpC -> RCHO

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	RCHO	simple_molecule
reactant	RCHO_Ext	simple_molecule

Name:

lactone_Ext -> lactone

Description:

Transport of lactone_Ext through a bacterial membrane, leading to the presence of lactone inside the cell.

Type:

transport

Pathway Components:

lactone_Ext - OmpC -> lactone

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	lactone	simple_molecule
reactant	lactone_Ext	simple_molecule

Name:

amide_Ext -> amide

Description:

Transport of amide_Ext through a bacterial membrane, leading to the presence of amide inside the cell.

Type:

transport

Pathway Components:

amide_Ext - OmpC -> amide

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	amide	simple_molecule
reactant	amide_Ext	simple_molecule

Name:

amine_Ext -> amine

Description:

Transport of amine_Ext through a bacterial membrane, leading to the presence of amine inside the cell.

Type:

transport

Pathway Components:

amine_Ext - OmpC -> amine

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	amine	simple_molecule
reactant	amine_Ext	simple_molecule

Name:

hydroxy carboxylate_Ext -> hydroxy carboxylate

Description:

Transport of hydroxy carboxylate_Ext through a bacterial membrane, leading to the presence of hydroxy carboxylate inside the cell.

Type:

transport

Pathway Components:

hydroxy carboxylate_Ext - OmpC -> hydroxy carboxylate

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	hydroxy carboxylate	simple_molecule
reactant	hydroxy carboxylate_Ext	simple_molecule

Name:

aldonate_Ext -> aldonate

Description:

Transport of aldonate_Ext through a bacterial membrane, leading to the presence of aldonate inside the cell.

Type:

transport

Pathway Components:

aldonate_Ext - OmpC -> aldonate

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	aldonate	simple_molecule
reactant	aldonate_Ext	simple_molecule

Name:

betaine_Ext -> betaine

Description:

Transport of betaine_Ext through a bacterial membrane, leading to the presence of betaine inside the cell.

Type:

transport

Pathway Components:

betaine_Ext - OmpC -> betaine

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	betaine	simple_molecule
reactant	betaine_Ext	simple_molecule

Name:

5-methylthioribose_Ext -> 5-methylthioribose

Description:

Transport of 5-methylthioribose_Ext through a bacterial membrane, leading to the presence of 5-methylthioribose inside the cell.

Type:

transport

Pathway Components:

5-methylthioribose_Ext - OmpC -> 5-methylthioribose

Components:

Function	Name	Type
product	5-methylthioribose	simple_molecule
reactant	5-methylthioribose_Ext	simple_molecule
catalyzer	OmpC	protein

Name:

inositol_Ext -> inositol

Description:

Transport of inositol_Ext through a bacterial membrane, leading to the presence of inositol inside the cell.

Type:

transport

Pathway Components:

inositol_Ext - OmpC -> inositol

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	inositol	simple_molecule
reactant	inositol_Ext	simple_molecule

Name:

amino acid_Ext -> amino acid

Description:

Transport of amino acid_Ext through a bacterial membrane, leading to the presence of amino acid inside the cell.

Type:

transport

Pathway Components:

amino acid_Ext - OmpC -> amino acid

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	amino acid	simple_molecule
reactant	amino acid_Ext	simple_molecule

Name:

base(2)_Ext -> base(2)

Description:

Transport of base(2)_Ext through a bacterial membrane, leading to the presence of base(2) inside the cell.

Type:

transport

Pathway Components:

base(2)_Ext - OmpC -> base(2)

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	base(2)	simple_molecule
reactant	base(2)_Ext	simple_molecule

Name:

dicarboxylate_Ext -> dicarboxylate

Description:

Transport of dicarboxylate_Ext through a bacterial membrane, leading to the presence of dicarboxylate inside the cell.

Type:

transport

Pathway Components:

dicarboxylate_Ext - OmpC -> dicarboxylate

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	dicarboxylate	simple_molecule
reactant	dicarboxylate_Ext	simple_molecule

Name:

polyol_Ext -> polyol

Description:

Transport of polyol_Ext through a bacterial membrane, leading to the presence of polyol inside the cell.

Type:

transport

Pathway Components:

polyol_Ext - OmpC -> polyol

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	polyol	simple_molecule
reactant	polyol_Ext	simple_molecule

Name:

short-chain alcohol_Ext -> short-chain alcohol

Description:

Transport of short-chain alcohol_Ext through a bacterial membrane, leading to the presence of short-chain alcohol inside the cell.

Type:

transport

Pathway Components:

short-chain alcohol_Ext - OmpC -> short-chain alcohol

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	short-chain alcohol	simple_molecule
reactant	short-chain alcohol_Ext	simple_molecule

Name:

short-chain acid anion_Ext -> short-chain acid anion

Description:

Transport of short-chain acid anion_Ext through a bacterial membrane, leading to the presence of short-chain acid anion inside the cell.

Type:

transport

Pathway Components:

short-chain acid anion_Ext - OmpC -> short-chain acid anion

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	short-chain acid anion	simple_molecule
reactant	short-chain acid anion_Ext	simple_molecule

Name:

organosulfur compound_Ext -> organosulfur compound

Description:

Transport of organosulfur compound_Ext through a bacterial membrane, leading to the presence of organosulfur compound inside the cell.

Type:

transport

Pathway Components:

organosulfur compound_Ext - OmpC -> organosulfur compound

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	organosulfur compound	simple_molecule
reactant	organosulfur compound_Ext	simple_molecule

Name:

sulfadiazine_Ext -> sulfadiazine

Description:

Transport of sulfadiazine_Ext through a bacterial membrane, leading to the presence of sulfadiazine inside the cell.

Type:

transport

Pathway Components:

sulfadiazine_Ext - OmpC -> sulfadiazine

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	sulfadiazine	simple_molecule
reactant	sulfadiazine_Ext	simple_molecule

Name:

ion_Ext -> ion

Description:

Transport of ion_Ext through a bacterial membrane, leading to the presence of ion inside the cell.

Type:

transport

Pathway Components:

ion_Ext - OmpC -> ion

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	ion	simple_molecule
reactant	ion_Ext	simple_molecule

Name:

glycerol 1-phosphate_Ext -> glycerol 1-phosphate

Description:

Transport of glycerol 1-phosphate_Ext through a bacterial membrane, leading to the presence of glycerol 1-phosphate inside the cell.

Type:

transport

Pathway Components:

glycerol 1-phosphate_Ext - OmpC -> glycerol 1-phosphate

Components:

Function	Name	Type
catalyzer	OmpC	protein
product	glycerol 1-phosphate	simple_molecule
reactant	glycerol 1-phosphate_Ext	simple_molecule

Name:

gfcA_mRNA -> GfcA

Description:

Translation of GfcA

Type:

translation

Pathway Components:

gfcA_mRNA -> GfcA

Components:

Function	Name	Type
product	GfcA	protein
reactant	gfcA_mRNA	RNA

Name:

ymiA-yciX_mRNA -> YmiA

Description:

Translation of YmiA

Type:

translation

Pathway Components:

ymiA-yciX_mRNA -> YmiA

Components:

Function	Name	Type
product	YmiA	protein
reactant	ymiA-yciX_mRNA	RNA

Name:

ymiA-yciX_mRNA -> YciX

Description:

Translation of YciX

Type:

translation

Pathway Components:

ymiA-yciX_mRNA -> YciX

Components:

Function	Name	Type
product	YciX	protein
reactant	ymiA-yciX_mRNA	RNA

Gensor Unit Map