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PdeL Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
c-di-GMP pdeL PdeL 5'pGpG pdeL_mRNA


Gensor Unit       
Name: PdeL
Classification:
Groups: Function unknown
Gene Ontology Terms (GO): biological_process GO:0045893 - positive regulation of transcription, DNA-templated
GO:0006355 - regulation of transcription, DNA-templated
molecular_function GO:0003677 - DNA binding
GO:0000984 - bacterial-type RNA polymerase transcription regulatory region sequence-specific DNA binding
GO:0071111 - cyclic-guanylate-specific phosphodiesterase activity
GO:0016787 - hydrolase activity
GO:0042803 - protein homodimerization activity
Components:
  Function Name Type
  simple_molecule 5'pGpG simple_molecule
  protein PdeL protein
  simple_molecule c-di-GMP simple_molecule
  gene pdeL gene
  RNA pdeL_mRNA RNA


Reactions       
Showing 3 reactions
PdeL pdeL pdeL_mRNA
Name: pdeL -> pdeL_mRNA
Description: Transcription of transcription unit pdeL. Reaction activation by PdeL.
Type: transcription
Pathway Components: pdeL - PdeL -> pdeL_mRNA
Components:
Function Name Type
activator PdeL protein
reactant pdeL gene
product pdeL_mRNA RNA
pdeL_mRNA PdeL
Name: pdeL_mRNA -> PdeL
Description: Translation of PdeL
Type: translation
Pathway Components: pdeL_mRNA -> PdeL
Components:
Function Name Type
product PdeL protein
reactant pdeL_mRNA RNA
PdeL c-di-GMP 5'pGpG
Name: c-di-GMP -> 5'pGpG
Description: Reaction transforming c-di-GMP into 5'pGpG
Type: state transition
Pathway Components: c-di-GMP - PdeL -> 5'pGpG
Components:
Function Name Type
product 5'pGpG simple_molecule
catalyzer PdeL protein
reactant c-di-GMP simple_molecule



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