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SrlR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
SrlB srlAEBD-gutM-srlR-gutQ HPr - phosphorylated_Ext SrlD mannitol-1-P ribulose-5P mannitol_Ext gulitol aldehydo-arabinose-5P PtsH SrlE sorbitol 6-phosphate srlAEBD-gutM-srlR-gutQ_mRNA SrlA SrlB fructose 6-phosphate SrlR SrlR GutQ gulitol_Ext gulitol GutM SrlA SrlE


Gensor Unit       
Name: SrlR
Classification:
Groups: Function unknown
Gene Ontology Terms (GO): biological_process GO:0042710 - biofilm formation
GO:1901135 - carbohydrate derivative metabolic process
GO:0005975 - carbohydrate metabolic process
GO:0034219 - carbohydrate transmembrane transport
GO:0008643 - carbohydrate transport
GO:0019294 - keto-3-deoxy-D-manno-octulosonic acid biosynthetic process
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cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0016021 - integral component of membrane
GO:0005887 - integral component of plasma membrane
GO:0005622 - intracellular anatomical structure
GO:0016020 - membrane
GO:0005886 - plasma membrane
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molecular_function GO:0005524 - ATP binding
GO:0003677 - DNA binding
GO:0003700 - DNA-binding transcription factor activity
GO:0019146 - arabinose-5-phosphate isomerase activity
GO:0097367 - carbohydrate derivative binding
GO:0042802 - identical protein binding
GO:0016853 - isomerase activity
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Components:
  Function Name Type
  protein GutM protein
  protein GutQ protein
  simple_molecule HPr - phosphorylated_Ext simple_molecule
  simple_molecule PtsH simple_molecule
  protein SrlA protein
  complex SrlA-SrlB-SrlE complex
  protein SrlB protein
  protein SrlD protein
  protein SrlE protein
  protein SrlR protein
  complex SrlR-gulitol complex
  simple_molecule aldehydo-arabinose-5P simple_molecule
  simple_molecule fructose 6-phosphate simple_molecule
  simple_molecule gulitol simple_molecule
  simple_molecule gulitol_Ext simple_molecule
  simple_molecule mannitol-1-P simple_molecule
  simple_molecule mannitol_Ext simple_molecule
  simple_molecule ribulose-5P simple_molecule
  simple_molecule sorbitol 6-phosphate simple_molecule
  gene srlAEBD-gutM-srlR-gutQ gene
  RNA srlAEBD-gutM-srlR-gutQ_mRNA RNA


Reactions       
Showing 14 reactions
SrlR srlAEBD-gutM-srlR-gutQ srlAEBD-gutM-srlR-gutQ_mRNA
Name: srlAEBD-gutM-srlR-gutQ -> srlAEBD-gutM-srlR-gutQ_mRNA
Description: Transcription of transcription unit srlAEBD-gutM-srlR-gutQ. Reaction inhibition by SrlR.
Type: transcription
Pathway Components: srlAEBD-gutM-srlR-gutQ - SrlR -> srlAEBD-gutM-srlR-gutQ_mRNA
Components:
Function Name Type
inhibitor SrlR protein
reactant srlAEBD-gutM-srlR-gutQ gene
product srlAEBD-gutM-srlR-gutQ_mRNA RNA
gulitol + SrlR SrlR-gulitol
Name: gulitol + SrlR -> SrlR-gulitol
Description: Reaction transforming gulitol, SrlR into SrlR-gulitol
Type: state transition
Pathway Components: gulitol + SrlR -> SrlR-gulitol
Components:
Function Name Type
reactant SrlR protein
product SrlR-gulitol complex
reactant gulitol simple_molecule
srlAEBD-gutM-srlR-gutQ_mRNA SrlA
Name: srlAEBD-gutM-srlR-gutQ_mRNA -> SrlA
Description: Translation of SrlA
Type: translation
Pathway Components: srlAEBD-gutM-srlR-gutQ_mRNA -> SrlA
Components:
Function Name Type
product SrlA protein
reactant srlAEBD-gutM-srlR-gutQ_mRNA RNA
SrlA + SrlB + SrlE SrlA-SrlB-SrlE
Name: SrlA + SrlB + SrlE -> SrlA-SrlB-SrlE
Description: Reaction transforming SrlA, SrlB, SrlE into SrlA-SrlB-SrlE
Type: state transition
Pathway Components: SrlA + SrlB + SrlE -> SrlA-SrlB-SrlE
Components:
Function Name Type
reactant SrlA protein
product SrlA-SrlB-SrlE complex
reactant SrlB protein
reactant SrlE protein
SrlA-SrlB-SrlE HPr - phosphorylated_Ext + gulitol_Ext sorbitol 6-phosphate + PtsH
Name: HPr - phosphorylated_Ext + gulitol_Ext -> sorbitol 6-phosphate + PtsH
Description: Transport of HPr - phosphorylated_Ext, gulitol_Ext through a bacterial membrane, leading to the presence of sorbitol 6-phosphate, PtsH inside the cell.
Type: transport
Pathway Components: HPr - phosphorylated_Ext + gulitol_Ext - SrlA-SrlB-SrlE -> sorbitol 6-phosphate + PtsH
Components:
Function Name Type
reactant HPr - phosphorylated_Ext simple_molecule
product PtsH simple_molecule
catalyzer SrlA-SrlB-SrlE complex
reactant gulitol_Ext simple_molecule
product sorbitol 6-phosphate simple_molecule
SrlA-SrlB-SrlE HPr - phosphorylated_Ext + mannitol_Ext mannitol-1-P + PtsH
Name: HPr - phosphorylated_Ext + mannitol_Ext -> mannitol-1-P + PtsH
Description: Transport of HPr - phosphorylated_Ext, mannitol_Ext through a bacterial membrane, leading to the presence of mannitol-1-P, PtsH inside the cell.
Type: transport
Pathway Components: HPr - phosphorylated_Ext + mannitol_Ext - SrlA-SrlB-SrlE -> mannitol-1-P + PtsH
Components:
Function Name Type
reactant HPr - phosphorylated_Ext simple_molecule
product PtsH simple_molecule
catalyzer SrlA-SrlB-SrlE complex
product mannitol-1-P simple_molecule
reactant mannitol_Ext simple_molecule
srlAEBD-gutM-srlR-gutQ_mRNA SrlE
Name: srlAEBD-gutM-srlR-gutQ_mRNA -> SrlE
Description: Translation of SrlE
Type: translation
Pathway Components: srlAEBD-gutM-srlR-gutQ_mRNA -> SrlE
Components:
Function Name Type
product SrlE protein
reactant srlAEBD-gutM-srlR-gutQ_mRNA RNA
srlAEBD-gutM-srlR-gutQ_mRNA SrlB
Name: srlAEBD-gutM-srlR-gutQ_mRNA -> SrlB
Description: Translation of SrlB
Type: translation
Pathway Components: srlAEBD-gutM-srlR-gutQ_mRNA -> SrlB
Components:
Function Name Type
product SrlB protein
reactant srlAEBD-gutM-srlR-gutQ_mRNA RNA
srlAEBD-gutM-srlR-gutQ_mRNA SrlD
Name: srlAEBD-gutM-srlR-gutQ_mRNA -> SrlD
Description: Translation of SrlD
Type: translation
Pathway Components: srlAEBD-gutM-srlR-gutQ_mRNA -> SrlD
Components:
Function Name Type
product SrlD protein
reactant srlAEBD-gutM-srlR-gutQ_mRNA RNA
SrlD sorbitol 6-phosphate fructose 6-phosphate
Name: sorbitol 6-phosphate -> fructose 6-phosphate
Description: Reaction transforming sorbitol 6-phosphate into fructose 6-phosphate
Type: state transition
Pathway Components: sorbitol 6-phosphate - SrlD -> fructose 6-phosphate
Components:
Function Name Type
catalyzer SrlD protein
product fructose 6-phosphate simple_molecule
reactant sorbitol 6-phosphate simple_molecule
srlAEBD-gutM-srlR-gutQ_mRNA GutM
Name: srlAEBD-gutM-srlR-gutQ_mRNA -> GutM
Description: Translation of GutM
Type: translation
Pathway Components: srlAEBD-gutM-srlR-gutQ_mRNA -> GutM
Components:
Function Name Type
product GutM protein
reactant srlAEBD-gutM-srlR-gutQ_mRNA RNA
srlAEBD-gutM-srlR-gutQ_mRNA SrlR
Name: srlAEBD-gutM-srlR-gutQ_mRNA -> SrlR
Description: Translation of SrlR
Type: translation
Pathway Components: srlAEBD-gutM-srlR-gutQ_mRNA -> SrlR
Components:
Function Name Type
product SrlR protein
reactant srlAEBD-gutM-srlR-gutQ_mRNA RNA
srlAEBD-gutM-srlR-gutQ_mRNA GutQ
Name: srlAEBD-gutM-srlR-gutQ_mRNA -> GutQ
Description: Translation of GutQ
Type: translation
Pathway Components: srlAEBD-gutM-srlR-gutQ_mRNA -> GutQ
Components:
Function Name Type
product GutQ protein
reactant srlAEBD-gutM-srlR-gutQ_mRNA RNA
GutQ aldehydo-arabinose-5P ribulose-5P
Name: aldehydo-arabinose-5P -> ribulose-5P
Description: Reaction transforming aldehydo-arabinose-5P into ribulose-5P
Type: state transition
Pathway Components: aldehydo-arabinose-5P - GutQ -> ribulose-5P
Components:
Function Name Type
catalyzer GutQ protein
reactant aldehydo-arabinose-5P simple_molecule
product ribulose-5P simple_molecule



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