RegulonDB RegulonDB 10.9: Operon Form
   

araC operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: araC
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: araC
Synonym(s): OP00004
Gene(s): araC   Genome Browser M3D Gene expression COLOMBOS
Reference(s): [1] Lee NL., et al., 1981
[2] Miyada CG., et al., 1984
Promoter
Name: araCp
+1: 70223
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 164
Sequence: tgacgccgtgcaaataatcaatgtggacttttctgccgtgattatagacacttttgttacGcgtttttgtcatggctttgg
                        -35                    -10          +1                   
Evidence: [HIPP]
[IHBCE]
[TIM]
Reference(s): [3] Hamilton EP., et al., 1988
[4] Wallace RG., et al., 1980
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote AraC-arabinose activator araCp 70110 70126 -105.0 ataaaaagcgTCAGGTAGGATCCGCTAAtcttatggat nd [APIORCISFBSCS], [BPP], [GEA], [SM] [5], [6]
proximal AraC-arabinose activator araCp 70131 70147 -84.0 ccgctaatctTATGGATAAAAATGCTATggcatagcaa nd [APIORCISFBSCS], [BPP], [GEA], [SM] [6]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal AraC repressor araCp 70131 70147 -84.0 ccgctaatctTATGGATAAAAATGCTATggcatagcaa nd [APIORCISFBSCS], [BPP], [GEA], [SM] [6]
proximal AraC-arabinose repressor araCp 70184 70200 -31.0 aaataatcaaTGTGGACTTTTCTGCCGTgattatagac nd [APIORCISFBSCS], [BCE], [GEA], [SM] nd
proximal AraC-arabinose repressor araCp 70205 70221 -10.0 ctgccgtgatTATAGACACTTTTGTTACgcgtttttgt nd [APIORCISFBSCS], [BCE], [GEA], [SM] [8]
remote AraC repressor araCp 70342 70358 128.0 tctgatgcaaTATGGACAATTGGTTTCTtctctgaatg nd [APIORCISFBSCS], [BCE], [BPP], [SM] nd
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CRP-cAMP activator araCp 70158 70179 -54.5 tggcatagcaAAGTGTGACGCCGTGCAAATAATcaatgtggac nd [APIORCISFBSCS], [BPP], [GEA], [SM] nd
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal XylR-xylose repressor araCp 70195 70213 -19.5 gtggacttttCTGCCGTGATTATAGACACttttgttacg nd [AIBSCS], [BPP], [GEA] [7]
proximal XylR-xylose repressor araCp 70216 70234 2.5 atagacacttTTGTTACGCGTTTTTGTCAtggctttggt nd [AIBSCS], [BPP], [GEA] [7]





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