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|
| Operon |  |
|---|---|
| Name: | ldcC |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | ldcC |
| Gene(s): | ldcC Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | RpoS-dependent expression at stationary phase has been described Kikuchi Y,1998. |
| Evidence: | [BTEI] Boundaries of transcription experimentally identified [LTED] Length of transcript experimentally determined |
| Reference(s): |
[1] Kikuchi Y., et al., 1998 [2] Lemonnier M., et al., 1998 [3] Yamamoto Y., et al., 1997 |
| Promoter | |
| Name: | ldcCp |
| +1: | Unknown |
| Sigma Factor: | Sigma38 Sigmulon |
| Note(s): | The ldcC -35 and -10 promoter sequences have been described in Yamamoto Y,1997 and Kikuchi Y,1998 as being close to the translational start site, even though the +1 for transcription has not been determined. In addition to the experimental evidence, the -10 sequence (TATGAT) in the ldcC promoter is specific for RpoS (σ38) Kikuchi Y,1998. |
| Evidence: |
[IMP] [TAS] |
| Reference(s): |
[4] Kikuchi Y., et al., 1997 [1] Kikuchi Y., et al., 1998 [3] Yamamoto Y., et al., 1997 |
| RNA cis-regulatory element | |
|---|
| Regulation, transcriptional elongation | |
| Attenuator type: | Transcriptional |
| Strand: | forward |
| Evidence: | [ICA] Inferred by computational analysis |
| Reference(s): | [5] Merino E, et al., 2005 |
| Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
|---|---|---|---|---|---|
| terminator | -16.6 | 209599 | 209626 | gttctgaaaaAGGGTCACTTCGGTGGCCCTTTTTTATcgccacggtt |
| Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
| Reference(s) |
|
|---|---|
[IMP] Inferred from mutant phenotype