RegulonDB RegulonDB 11.1: Operon Form
   

efp operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: efp
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: efp
Gene(s): efp   Genome Browser M3D Gene expression COLOMBOS
Evidence: [COMP-AINF] Inferred computationally without human oversight
Promoter
Name: efpp
+1: 4375567
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 132
Sequence: aaagctttttggcgctgcgtccggctaacagtttttcctccgcgtctatattcaaaagacGcagaagttcatcaggatcgg
                         -35                   -10          +1                   
Evidence: [COMP-AINF]
[COMP-HINF-POSITIONAL-IDENTIFICATION]
Reference(s): [1] Aoki H., et al., 1991
[2] Huerta AM., et al., 2003
Allosteric regulation of RNA-polymerase
  Regulator Function Promoter target of RNApol Growth Conditions Note Evidence Reference
  ppGpp inhibition efpp nd   [EXP-IEP-GENE-EXPRESSION-ANALYSIS] [3]
Evidence: [EXP-IEP-GENE-EXPRESSION-ANALYSIS] Gene expression analysis
Reference(s): [3] Traxler MF., et al., 2008


Evidence    

 [COMP-AINF] Inferred computationally without human oversight

 [COMP-HINF-POSITIONAL-IDENTIFICATION] Human inference of promoter position


Reference(s)    

 [1] Aoki H., Adams SL., Chung DG., Yaguchi M., Chuang SE., Ganoza MC., 1991, Cloning, sequencing and overexpression of the gene for prokaryotic factor EF-P involved in peptide bond synthesis., Nucleic Acids Res 19(22):6215-20

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [3] Traxler MF., Summers SM., Nguyen HT., Zacharia VM., Hightower GA., Smith JT., Conway T., 2008, The global, ppGpp-mediated stringent response to amino acid starvation in Escherichia coli., Mol Microbiol 68(5):1128-48

RegulonDB