RegulonDB RegulonDB 10.9: Operon Form
   

dcuC operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: dcuC
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: dcuC
Gene(s): dcuC   Genome Browser M3D Gene expression COLOMBOS
Note(s): The induction of dcuC is affected by FNR and ArcA regulators, but FNR plays the major role.
Promoter
Name: dcuCp
+1: 656083
Distance from start of the gene: 115
Sequence: ccaaccgctaaatatgcgttttgttatctatgtataaaaacagcaacttcaatgtcttaaTggcagtttttcttgatttta
Evidence: [TIM]
Reference(s): [1] Zientz E., et al., 1999
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote ArcA-Phosphorylated activator dcuCp 656416 656430 -340.0 cgcttgttcaAGTTAAATATTTCCGCgcatcgatta nd [APIORCISFBSCS], [GEA] [1]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal FNR activator dcuCp 656110 656123 -33.5 aaatatgcgtTTTGTTATCTATGTAtaaaaacagc nd [APIORCISFBSCS], [GEA] [1]
proximal FNR activator dcuCp 656140 656153 -63.5 cacattattaTGTGATAATTGCCAAccgctaaata nd [APIORCISFBSCS], [GEA] [1]
remote FNR activator dcuCp 656192 656205 -115.5 agctaacaccATTGCAATTAACAAAtttgcatcaa nd [APIORCISFBSCS], [GEA] [1]


RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Translational
Strand: reverse
Evidence: [ICA] Inferred by computational analysis
Reference(s): [2] Merino E, et al., 2005
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -7.3 655976 655987 tactttggggCCTGGAGACAGgaaaaattat
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"





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