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Name: | asr | |||||||||
Gene(s): | asr Genome Browser M3D Gene expression COLOMBOS | |||||||||
Note(s): | The asr gene was significantly upregulated in bacterial cells associated with lettuce roots in a microarray analysis Hou Z,2012. The expression of asr is also increased under acidic growth conditions in either aerobiosis or microaerobiosis Marzan LW,2013 The asr gene is upregulated by long-term (8 to 12 h) exposure of E. coli to some biocides Merchel Piovesan Pereira B, Wang X, Tagkopoulos I,2020. Based on microarray and RT-qPCR analyses, it was determined that the asr, frc, oxc, ydeO, and yegR acid stress genes are significantly upregulated upon exposure to exogenous glutathione (GSH) Goswami M,2018 |
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Evidence: | [BTEI] Boundaries of transcription experimentally identified | |||||||||
Reference(s): | [1] Suziedeliene E., et al., 1999 | |||||||||
Promoter | ||||||||||
Name: | asrp2 | |||||||||
+1: | 1671327 | |||||||||
Sigma Factor: | Sigma38 Sigmulon | |||||||||
Distance from start of the gene: | 49 | |||||||||
Sequence: |
gttacacgctgaaaccaaccactcacggaagtctgccattcccagggatatagttatttcAacggccccgcagtggggtta -35 -10 +1 |
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Evidence: |
[ICWHO] [IHBCE] [IMP] [IPI] [TIM] |
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Reference(s): |
[2] Huerta AM., et al., 2003 [3] Ogasawara H., et al., 2007 [4] Seputiene V., et al., 2004 [1] Suziedeliene E., et al., 1999 |
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Terminator(s) | ||||||||||
Type: | rho-independent | |||||||||
Sequence: | cagtaatgctGGCGCGCCCCCTCGCGCCtgaaaattac | |||||||||
Reference(s): | [1] Suziedeliene E., et al., 1999 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | PhoB-phosphorylated | activator | asrp2 | 1671288 | 1671306 | -30.0 | aaaccaaccaCTCACGGAAGTCTGCCATTcccagggata | nd | [GEA], [APIORCISFBSCS], [BCE] | [1] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | RcdA | activator | asrp2 | 1671254 | 1671264 | -68.5 | tttattcagcGTTTGTACATAtcgttacacg | nd | [GEA], [IC], [BPP], [IC] | [5] |
proximal | RcdA | activator | asrp2 | 1671264 | 1671274 | -58.5 | gtttgtacatATCGTTACACGctgaaaccaa | nd | [GEA], [IC], [BPP], [IC] | [5] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | RstA-phosphorylated | activator | asrp2 | 1671257 | 1671273 | -62.0 | attcagcgttTGTACATATCGTTACACgctgaaacca | nd | [GEA], [APIORCISFBSCS], [BPP] | [3] |
Name: | asr | |||||||||
Gene(s): | asr Genome Browser M3D Gene expression COLOMBOS | |||||||||
Note(s): | The asr gene was significantly upregulated in bacterial cells associated with lettuce roots in a microarray analysis Hou Z,2012. The expression of asr is also increased under acidic growth conditions in either aerobiosis or microaerobiosis Marzan LW,2013 The asr gene is upregulated by long-term (8 to 12 h) exposure of E. coli to some biocides Merchel Piovesan Pereira B, Wang X, Tagkopoulos I,2020. Based on microarray and RT-qPCR analyses, it was determined that the asr, frc, oxc, ydeO, and yegR acid stress genes are significantly upregulated upon exposure to exogenous glutathione (GSH) Goswami M,2018 |
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Evidence: | [BTEI] Boundaries of transcription experimentally identified | |||||||||
Reference(s): | [1] Suziedeliene E., et al., 1999 | |||||||||
Promoter | ||||||||||
Name: | asrp | |||||||||
+1: | 1671327 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 49 | |||||||||
Sequence: |
gttacacgctgaaaccaaccactcacggaagtctgccattcccagggatatagttatttcAacggccccgcagtggggtta -35 -10 +1 |
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Evidence: |
[ICWHO] [IHBCE] [IMP] [IPI] [TIM] |
|||||||||
Reference(s): |
[2] Huerta AM., et al., 2003 [3] Ogasawara H., et al., 2007 [4] Seputiene V., et al., 2004 [1] Suziedeliene E., et al., 1999 |
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Terminator(s) | ||||||||||
Type: | rho-independent | |||||||||
Sequence: | cagtaatgctGGCGCGCCCCCTCGCGCCtgaaaattac | |||||||||
Reference(s): | [1] Suziedeliene E., et al., 1999 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | PhoB-phosphorylated | activator | asrp | 1671288 | 1671306 | -30.0 | aaaccaaccaCTCACGGAAGTCTGCCATTcccagggata | nd | [GEA], [APIORCISFBSCS], [BCE] | [1] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | RcdA | activator | asrp | 1671254 | 1671264 | -68.5 | tttattcagcGTTTGTACATAtcgttacacg | nd | [GEA], [IC], [BPP], [IC] | [5] |
proximal | RcdA | activator | asrp | 1671264 | 1671274 | -58.5 | gtttgtacatATCGTTACACGctgaaaccaa | nd | [GEA], [IC], [BPP], [IC] | [5] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | RstA-phosphorylated | activator | asrp | 1671257 | 1671273 | -62.0 | attcagcgttTGTACATATCGTTACACgctgaaacca | nd | [GEA], [APIORCISFBSCS], [BPP] | [3] |
RNA cis-regulatory element | ![]() |
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Regulation, transcriptional elongation | |
Attenuator type: | Translational |
Strand: | forward |
Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
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terminator | -7.9 | 1671330 | 1671346 | tatttcaacgGCCCCGCAGTGGGGTTaaatgaaaaa |
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
Reference(s) |
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