RegulonDB RegulonDB 10.8: Operon Form
   

inaA operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: inaA
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: inaA
Gene(s): inaA   Genome Browser M3D Gene expression COLOMBOS
Note(s): Salicylate activates the inaAp and micFp promoters through Rob 22753060
Promoter
Name: inaAp
+1: 2349499
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 27
Sequence: ttcattaatacgacacgtttcattaagattttcctcaggtaaccacctatagtcattgtcGttaataaaaatgacaggcga
                       -35                      -10         +1                   
Evidence: [HIPP]
Reference(s): [1] Martin RG., et al., 1999
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal MarA activator inaAp 2349531 2349550 -41.5 attcattaatACGACACGTTTCATTAAGATtttcctcagg nd [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA] [1], [2], [3]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal Rob activator inaAp 2349531 2349550 -41.5 attcattaatACGACACGTTTCATTAAGATtttcctcagg nd [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA] [1], [4]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal SoxS activator inaAp 2349531 2349550 -41.5 attcattaatACGACACGTTTCATTAAGATtttcctcagg nd [APIORCISFBSCS], [BPP], [CV(CHIP-SV/GEA/ROMA)], [CV(GEA/ROMA)], [GEA] [1], [2], [3]


RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Translational
Strand: reverse
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -12.9 2349475 2349514 caggtaaccaCCTATAGTCATTGTCGTTAATAAAAATGACAGGCGATAGggtatggcag
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"





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