Name: |
glcDEFGBA |
Gene(s): |
glcA, glcB, glcG, glcF, glcE, glcD
Genome Browser
M3D Gene expression
COLOMBOS
|
Evidence: |
[LTED] Length of transcript experimentally determined |
Reference(s): |
[1] Nunez MF., et al., 2001
|
Promoter |
|
Name: |
glcDp |
+1: |
3128076 |
Sigma Factor: |
Sigma70 Sigmulon |
Distance from start of the gene: |
55
|
Sequence: |
ggtctgaccggtagctaaagagatagacgaaaacgaaaagcccgcttaataactgttcacAgaagcagcgcgcaaaaatca -35 -10 +1
|
Evidence: |
[HIPP] [ICWHO] [IHBCE] [TIM]
|
Reference(s): |
[2] Huerta AM., et al., 2003 [3] Pellicer MT., et al., 1999
|
Type |
Transcription factor |
Function |
Promoter |
Binding Sites |
Growth Conditions |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
remote |
ArcA-phosphorylated
|
repressor |
glcDp |
3128173
|
3128187
|
-104.0
|
tatgttacatCAATTTAACATTGAGttaaccaaga |
nd
|
[GEA], [AIBSCS], [AIBSPD], [BPP], [CCE]
|
[3], [4]
|
remote |
ArcA-phosphorylated
|
repressor |
glcDp |
3128180
|
3128194
|
-111.0
|
aagtgattatGTTACATCAATTTAAcattgagtta |
nd
|
[GEA], [AIBSPD], [BPP], [CCE]
|
[3]
|
Type |
Transcription factor |
Function |
Promoter |
Binding Sites |
Growth Conditions |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
remote |
IHF
|
activator |
glcDp |
3128177
|
3128189
|
-107.0
|
attatgttacATCAATTTAACATtgagttaacc |
nd
|
[GEA], [BCE]
|
[3]
|
Type |
Transcription factor |
Function |
Promoter |
Binding Sites |
Growth Conditions |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
proximal |
PdhR
|
repressor |
glcDp |
3128124
|
3128140
|
-56.0
|
gctggaaaaaAAATGGTCTGACCGGTAgctaaagaga |
nd
|
[GEA], [AIBSCS], [BPP]
|
[5]
|
Transcription factor |
Function |
Promoter |
Binding Sites |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
GlcC-glycolate |
activator |
glcDp |
3128245
|
3128259
|
-176.0
|
ccggacctcgTGCACAGGTAGGACCaatttttctg
|
[GEA]
|
[3]
|
ArcA-phosphorylated |
repressor |
glcDp |
3128180
|
3128194
|
-111.0
|
aagtgattatGTTACATCAATTTAAcattgagtta
|
[GEA]
|
[3]
|
IHF |
activator |
glcDp |
3128177
|
3128189
|
-107.0
|
attatgttacATCAATTTAACATtgagttaacc
|
[GEA]
|
[3]
|
ArcA-phosphorylated |
repressor |
glcDp |
3128173
|
3128187
|
-104.0
|
tatgttacatCAATTTAACATTGAGttaaccaaga
|
[GEA]
|
[3], [4]
|
PdhR |
repressor |
glcDp |
3128124
|
3128140
|
-56.0
|
gctggaaaaaAAATGGTCTGACCGGTAgctaaagaga
|
[GEA]
|
[5]
|