RegulonDB RegulonDB 10.10: Operon Form
   

amiA-hemF operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: amiA-hemF
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: amiA-hemF
Gene(s): amiA, hemF   Genome Browser M3D Gene expression COLOMBOS
Evidence: [LTED] Length of transcript experimentally determined
Reference(s): [1] Troup B., et al., 1994
Promoter
Name: amiAp
+1: 2552241
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 111
Sequence: gtgaacggtcgaattagccaatatctgacgaaaatcggttgaaaaagtggcataatggggAgttgtcaactattgaaatga
                         -35                       -10      +1                   
Evidence: [HIPP]
[ICWHO]
[IHBCE]
[TIM]
Reference(s): [2] Huerta AM., et al., 2003
[1] Troup B., et al., 1994
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal IHF repressor amiAp 2552254 2552266 20.5 tgtcaactatTGAAATGAAAAGTaaaacaattc nd [APIORCISFBSCS] [1]


Transcription unit          
Name: hemF
Gene(s): hemF   Genome Browser M3D Gene expression COLOMBOS
Evidence: [LTED] Length of transcript experimentally determined
Reference(s): [1] Troup B., et al., 1994
Promoter
Name: hemFp3
+1: 2552952
Distance from start of the gene: 273
Sequence: aaggatcacctattgcaacaagtgctgtttgatctggtgcaaacagataccattaaaaatAgtctgacgctcggctcgcat
Note(s): The hemFp3 promoter appears to be functional only under oxidative stress Mancini S,2015.
Evidence: [TIM]
Reference(s): [3] Mancini S., et al., 2015
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd OxyR activator hemFp3 nd nd nd nd nd [GEA], [BPP] [3]


Transcription unit       
Name: hemF
Gene(s): hemF   Genome Browser M3D Gene expression COLOMBOS
Evidence: [LTED] Length of transcript experimentally determined
Reference(s): [1] Troup B., et al., 1994
Promoter
Name: hemFp2
+1: 2552982
Distance from start of the gene: 243
Sequence: gatctggtgcaaacagataccattaaaaatagtctgacgctcggctcgcatattctgaagAagattaagccggtgcataaa
Evidence: [TIM]
Reference(s): [3] Mancini S., et al., 2015


Transcription unit          
Name: hemF
Gene(s): hemF   Genome Browser M3D Gene expression COLOMBOS
Evidence: [LTED] Length of transcript experimentally determined
Reference(s): [1] Troup B., et al., 1994
Promoter
Name: hemFp1
+1: 2553205
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 20
Sequence: ccacagcgattgctgaaggcgtgatcagttatttccactggttcgacaaccagaaagcacAttcgaaaaagcgataagtta
                             -35                   -10      +1                   
Evidence: [ICWHO]
[TIM]
Reference(s): [2] Huerta AM., et al., 2003
[1] Troup B., et al., 1994
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal IHF repressor hemFp1 2553206 2553218 8.0 agaaagcacaTTCGAAAAAGCGAtaagttatga nd [APIORCISFBSCS] [1]





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