RegulonDB RegulonDB 10.10: Operon Form
   

lpxP operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: lpxP
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: lpxP
Synonym(s): ddg
Gene(s): lpxP   Genome Browser M3D Gene expression COLOMBOS
Promoter
Name: lpxPp
+1: 2495578
Sigma Factor: Sigma24 Sigmulon
Distance from start of the gene: 67
Sequence: tgtcctgactagtctttacactctttacaggaaccattgtcgtacatgatggcccaaccaAttgagtgtaccgctgtcgac
                               -35                  -10     +1                   
Note(s): The transcriptional start site of the lpxP promoter was also determined by Rhodius VA,2005 and it was different by 3 bp from the one characterized by Rezuchova B,2003.
Evidence: [AIBSCS]
[AIPP]
[HIPP]
[ICWHO]
[TIM]
Reference(s): [1] Huerta AM., et al., 2003
[2] Rezuchova B., et al., 2003
[3] Rhodius VA., et al., 2005


Evidence    

 [AIBSCS] Automated inference based on similarity to consensus sequences

 [AIPP] Automated inference of promoter position

 [HIPP] Human inference of promoter position

 [ICWHO] Inferred computationally without human oversight

 [TIM] Transcription initiation mapping


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Rezuchova B., Miticka H., Homerova D., Roberts M., Kormanec J., 2003, New members of the Escherichia coli sigmaE regulon identified by a two-plasmid system., FEMS Microbiol Lett 225(1):1-7

 [3] Rhodius VA., Suh WC., Nonaka G., West J., Gross CA., 2005, Conserved and variable functions of the sigmaE stress response in related genomes., PLoS Biol 4(1):e2

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