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Name: | yiaKLMNO-lyx-sgbHUE | |||||||||
Synonym(s): | yiaKLMNO-lyxK-sgbHUE, yiaKLMNOPQRS | |||||||||
Gene(s): | yiaK, yiaL, yiaM, yiaN, yiaO, lyxK, sgbH, sgbU, sgbE Genome Browser M3D Gene expression COLOMBOS | |||||||||
Evidence: | [BTEI] Boundaries of transcription experimentally identified [CV(LTED/PM)] cross validation(LTED/PM) [LTED] Length of transcript experimentally determined [PM] Polar mutation |
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Reference(s): |
[1] Ibanez E., et al., 2000 [2] Ibanez E., et al., 2000 [3] Yew WS., et al., 2002 |
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Promoter | ||||||||||
Name: | yiaKp | |||||||||
+1: | 3742674 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 59 | |||||||||
Sequence: |
tcttttgaaattcatcaatcagattgccttgttaaaaagtgatcgatatatttgaaatcaAgtttcgcatattgaaatttt -35 -10 +1 |
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Evidence: |
[ICWHO] [IMP] [TIM] |
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Reference(s): |
[4] Huerta AM., et al., 2003 [1] Ibanez E., et al., 2000 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | CRP-cyclic-AMP | activator | yiaKp | 3742558 | 3742579 | -105.5 | tggtagcgcaAAGTGTGCCGTAGTTCACGATCtcgacagata | nd | [GEA], [APIORCISFBSCS], [BPP] | [1] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | CRP-cyclic-AMP | unknown | yiaKp | 3742725 | 3742746 | 62.5 | aaaacaaggaAGCCTGGGATGAAAGTGACATTtgagcagtta | nd | [GEA], [APIORCISFBSCS], [BPP] | [1] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | IHF | activator | yiaKp | 3742618 | 3742630 | -49.5 | tttatgtcttTTGAAATTCATCAatcagattgc | nd | [GEA], [APIORCISFBSCS], [BPP], [SM] | [1] |
Name: | yiaKLMNO-lyx-sgbHUE |
Gene(s): | yiaK, yiaL, yiaM, yiaN, yiaO, lyxK, sgbH, sgbU, sgbE Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified [CV(LTED/PM)] cross validation(LTED/PM) [LTED] Length of transcript experimentally determined [PM] Polar mutation |
Reference(s): |
[1] Ibanez E., et al., 2000 [2] Ibanez E., et al., 2000 [3] Yew WS., et al., 2002 |
Promoter | |
Name: | yiaKp2 |
+1: | 3742720 |
Sigma Factor: | Sigma24 Sigmulon |
Distance from start of the gene: | 13 |
Sequence: |
tatatttgaaatcaagtttcgcatattgaaattttaagccaaaaaagcgatcaaaaaaacAaggaagcctgggatgaaagt -35 -10 +1 |
Evidence: |
[AIBSCS] [AIPP] [ICWHO] [TIM] |
Reference(s): |
[4] Huerta AM., et al., 2003 [5] Rhodius VA., et al., 2005 |
Reference(s) |
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