RegulonDB RegulonDB 10.10: Operon Form
   

rtcBA operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: rtcBA
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: rtcBA
Gene(s): rtcA, rtcB   Genome Browser M3D Gene expression COLOMBOS
Evidence: [PM] Polar mutation
Reference(s): [1] Genschik P., et al., 1998
Promoter
Name: rtcBp
+1: 3558107
Sigma Factor: Sigma54 Sigmulon
Distance from start of the gene: 28
Sequence: tgaattaaaaaattaagctgcttatttaattttctggcacgacggttgcaattatcaggaCagcaaacaacgaaaagagaa
                                   -24         -12          +1                   
Evidence: [APIORCISFBSCS]
[HIPP]
[ICWHO]
[TIM]
Reference(s): [1] Genschik P., et al., 1998
[2] Huerta AM., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal IHF activator rtcBp 3558153 3558165 -52.0 taaaacaatgAATTAAAAAATTAagctgcttat nd [AIBSCS] [1]
proximal IHF activator rtcBp 3558163 3558175 -62.0 taatctttttTAAAACAATGAATtaaaaaatta nd [AIBSCS] [1]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd RtcR activator rtcBp nd nd nd nd nd [GEA], [BPP] [1]





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