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Name: | grxA | ||||||||||
Gene(s): | grxA Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Note(s): | The transcription of the gene grxA is enhanced under high oxygen saturation (300%) in the absence of the superoxide dismutase proteins SodA and SodB Baez A,2013 Sulfane sulfur modifies OxyR at Cys199 to form a protein persulfide that in turn activates the expression of grxA, trxC, and katG promoters under both aerobic and anaerobic conditions Hou N, Yan Z, Fan K, Li H, Zhao R, Xia Y, Xun L, Liu H,2019 The transcript of grxA is increased after σE induction, as observed in high-throughput analysis of gene expression Lacoux C,2020. |
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Reference(s): | [1] Tao K. 1997 | ||||||||||
Promoter | |||||||||||
Name: | grxAp | ||||||||||
+1: | 890776 | ||||||||||
Distance from start of the gene: | 23 | ||||||||||
Sequence: |
attaatgcaacaggttaaacctactttcagcgaatacattttagcgtgatcattacaggcAtaaatctatgaggagagaaa |
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Note(s): | This promoter appears to be induced in two phases after σE induction. It is induced during the first 5 minutes following σE induction, decreased from 5 to 10 minutes, induced from 10 to 15 minutes, and decreased from 15 to 20 minutes Lacoux C,2020. |
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Evidence: | [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] | ||||||||||
Reference(s): | [1] Tao K. 1997 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | OxyR | activator | grxAp | 890761 | 890777 | 8.0 | tcattacaggCATAAATCTATGAGGAGagaaataatg | nd | [EXP-IEP-RNA-SEQ], [COMP-HINF], [EXP-CHIP-CHIP-MANUAL] | S | [2] |
proximal | OxyR | activator | grxAp | 890812 | 890828 | -44.0 | caattaatgcAACAGGTTAAACCTACTttcagcgaat | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [3] |
proximal | OxyR | activator | grxAp | 890834 | 890850 | -66.0 | gtttaacagtTATAGCTTTTAGCAATTaatgcaacag | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IEP-RNA-SEQ], [COMP-HINF], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-CHIP-EXO-MANUAL], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | C | [1], [2], [3] |
Reference(s) |
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