RegulonDB RegulonDB 10.9: Operon Form

adiY operon and associated TUs in Escherichia coli K-12 genome

Name: adiY
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: adiY
Gene(s): adiY   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Name: adiYp
+1: 4338042
Distance from start of the gene: 113
Evidence: [HIPP]
Reference(s): [1] Stim-Herndon KP., et al., 1996
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd H-NS repressor adiYp nd nd nd nd nd [BPP], [GEA], [IGI] [3]
sRNA Interaction TU
sRNA TU Regulated Function Binding Sites Regulatory Mechanism Evidence (Confirmed, Strong, Weak) Reference(s)
PosLeft PosRight Target sequence (mRNA)
small regulatory RNA SgrS adiY repressor 4337931 4337945 CAUGUACUCCUGAGU TRANSLATION-BLOCKING, MRNA-DEGRADATION [IMP], [SM] [2]

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: reverse
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -9.7 4338099 4338136 catactttttGCGCGGCCCCACCCCGCGCTTTTTTTTGCCTGTTATTtatcctgtaa
  anti-terminator -8.0 4338130 4338163 cataaaaattGCTGCAAACAAAAATGTCATACTTTTTGCGCGGccccaccccg
  anti-anti-terminator -5.3 4338151 4338194 gccttaggccTTTTGAGTATGGCAACGTTTTCATAAAAATTGCTGCAAACAAAaatgtcatac
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"