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|
| Operon |  |
|---|---|
| Name: | tgt-yajC-secDF |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | tgt-yajC |
| Gene(s): | tgt, yajC Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | CFNR represses yajC gene expression under anaerobiosis, but it is not known which of the two promoters transcribing the gene is affected, or even if this regulation is direct or indirect Salmon K,2003. |
| Evidence: | [BTEI] Boundaries of transcription experimentally identified [LTED] Length of transcript experimentally determined |
| Reference(s): | [1] Pogliano KJ., et al., 1994 |
| Promoter | |
| Name: | tgtp |
| +1: | 426055 |
| Distance from start of the gene: | 82 |
| Sequence: |
gaagagaaatatcgcttttttagttacggtgatgcgatgtttatcacgtacaatccgcagGcaattaatgagcgcgtcggg |
| Evidence: |
[RS-EPT-CBR] [TIM] |
| Reference(s): |
[2] Reuter K., et al., 1991 [3] Salgado H, et al., 2012 |
| Terminator(s) | |
| Type: | rho-independent |
| Sequence: | gctgttcagaTCACTGGTGCGCGCGGAGTCGCCGCCAGTGAgcaaacgctg |
| Reference(s): | [1] Pogliano KJ., et al., 1994 |
| Name: | yajC-secDF | ||||
| Gene(s): | yajC, secD, secF Genome Browser M3D Gene expression COLOMBOS | ||||
| Note(s): | The yajC gene is expressed at about 5- to 10-fold higher levels than either secD or secF. FNR represses yajC gene expression under anaerobiosis, but it is not known which of the two promoters transcribing the gene is affected, or even if this regulation is direct or indirect Salmon K,2003. |
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| Evidence: | [BTEI] Boundaries of transcription experimentally identified [LTED] Length of transcript experimentally determined |
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| Reference(s): | [1] Pogliano KJ., et al., 1994 | ||||
| Promoter | |||||
| Name: | yajCp | ||||
| +1: | 427205 | ||||
| Distance from start of the gene: | 82 | ||||
| Sequence: |
| Evidence: |
[HIPP] |
[TIM] Reference(s): |
[2] Reuter K., et al., 1991
|
|
| RNA cis-regulatory element | |
|---|
| Regulation, transcriptional elongation | |
| Attenuator type: | Transcriptional |
| Strand: | forward |
| Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
|---|---|---|---|---|---|
| terminator | -6.3 | 425988 | 426016 | ctataaagcaGCGGTAGAAGAGAAATATCGCTTTTTTAgttacggtga | |
| anti-terminator | -4.8 | 425950 | 425996 | gtttcggcctTTGCCGGTTATCAACACACCATGAACGCCTATAAAGCAGCGGTAGAagagaaatat | |
| anti-anti-terminator | -5.3 | 425944 | 425957 | atgctggtttCGGCCTTTGCCGGttatcaacac |
| Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
| Reference(s) |
|
|---|---|
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates