RegulonDB RegulonDB 10.8: Operon Form

glyU operon and associated TUs in Escherichia coli K-12 genome

Name: glyU
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: glyU
Gene(s): glyU   Genome Browser M3D Gene expression COLOMBOS
Name: glyUp
+1: 2999064
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 7
Sequence: tcagcagtcagcagcgtggcacttgctaaggagagcgtaaggtttataatgccttacgcaTctcgaagcgggcgtagttca
                       -35                   -10            +1                   
Note(s): The matches for -10 and -35 hexamers to the consensus are usually convincing, but in many cases, the start point of transcription has not been experimentally determined.
Evidence: [HIPP]
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal Fis activator glyUp 2999124 2999138 -67.0 gccaaaatgcTGATGGCGAATTAATcagcagtcag nd [BCE] nd

Transcription unit       
Gene(s): glyU   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Translational
Strand: reverse
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -21.6 2999055 2999101 gcgtggcactTGCTAAGGAGAGCGTAAGGTTTATAATGCCTTACGCATCTCGAAGCgggcgtagtt
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"