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Name: | aldA | |||||||||
Gene(s): | aldA Genome Browser M3D Gene expression COLOMBOS | |||||||||
Note(s): | The expression of the gene aldA is enhanced under oxygen limitation Kawaguchi H, Miyagawa H, Nakamura-Tsuruta S, Takaya N, Ogino C, Kondo A,2019. | |||||||||
Evidence: | [LTED] Length of transcript experimentally determined | |||||||||
Reference(s): |
[1] Baldoma L., et al., 1988 [2] Chen YM., et al., 1987 [3] Pellicer MT., et al., 1999 |
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Promoter | ||||||||||
Name: | aldAp | |||||||||
+1: | 1488190 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 42 | |||||||||
Sequence: |
cccttcacagaattgtcctttcacgattccgtctctctgatgattgatgttaattaacaaTgtattcaccgaaaacaaaca -35 -10 +1 |
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Evidence: |
[HIPP] [ICWHO] [TIM] |
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Reference(s): |
[4] Huerta AM., et al., 2003 [5] Limon A., et al., 1997 [6] Pellicer MT., et al., 1999 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | ArcA-phosphorylated | repressor | aldAp | 1488026 | 1488040 | -157.0 | aaagtcgctcGTTACGTTAAAAATTgcccgtttgt | nd | [APIORCISFBSCS], [BPP] | [6] |
remote | ArcA-phosphorylated | repressor | aldAp | 1488046 | 1488060 | -137.0 | aaattgcccgTTTGTGAACCACTTGtttgcaaacg | nd | [APIORCISFBSCS], [BPP] | [6] |
proximal | ArcA-phosphorylated | repressor | aldAp | 1488178 | 1488192 | -5.0 | gatgattgatGTTAATTAACAATGTattcaccgaa | nd | [EME], [AIBSPD], [APIORCISFBSCS], [BPP], [CCE], [SM] | [6], [10] |
proximal | ArcA-phosphorylated | repressor | aldAp | 1488184 | 1488198 | 2.0 | tgatgttaatTAACAATGTATTCACcgaaaacaaa | nd | [AIBSCS], [BPP] | [6] |
proximal | ArcA-phosphorylated | repressor | aldAp | 1488195 | 1488209 | 13.0 | aacaatgtatTCACCGAAAACAAACatataaatca | nd | [AIBSCS], [BPP], [SM] | [6] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CRP-cyclic-AMP | activator | aldAp | 1488120 | 1488141 | -59.5 | ttacacttgtTTTTATGAAGCCCTTCACAGAAttgtcctttc | nd | [GEA], [BCE] | [5] |
Reference(s) |
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