RegulonDB RegulonDB 10.10: Operon Form
   

caiF operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: caiF
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: caiF
Gene(s): caiF   Genome Browser M3D Gene expression COLOMBOS
Evidence: [LTED] Length of transcript experimentally determined
Reference(s): [1] Eichler K., et al., 1996
Promoter
Name: caiFp
+1: 34218
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 82
Sequence: gatgacataagcaggatttagctcacacttatcgacggtgaagttgcatactatcgatatAtccacaattttaatatggcc
                      -35                        -10        +1                   
Evidence: [HIPP]
[ICWHO]
[IHBCE]
[RS-EPT-CBR]
[TIM]
Reference(s): [1] Eichler K., et al., 1996
[2] Huerta AM., et al., 2003
[3] Salgado H, et al., 2012
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CRP-cyclic-AMP activator caiFp 34166 34187 -41.5 ttgatgacatAAGCAGGATTTAGCTCACACTTatcgacggtg nd [GEA], [BCE] [1]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal FNR activator caiFp 34156 34169 -55.5 atcgatatttTTGATGACATAAGCaggatttagc nd [GEA], [BCE] [1]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd H-NS repressor caiFp nd nd nd nd nd [GEA], [BPP] [1]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd NarL-phosphorylated repressor caiFp nd nd nd nd nd [GEA], [BPP] [1]





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