Name: |
fixABCX |
Gene(s): |
fixA, fixB, fixC, fixX
Genome Browser
M3D Gene expression
COLOMBOS
|
Note(s): |
On the basis of studies of L-carnitine metabolism and the development of a biosensor, it was determined that crotonobetainyl-CoA is the sought-after coactivator of CaiF in the fixAp promoter Kugler P, Fröhlich D, Wendisch VF,2020 |
Evidence: |
[LTED] Length of transcript experimentally determined |
Reference(s): |
[1] Eichler K., et al., 1995
|
Promoter |
|
Name: |
fixAp |
+1: |
42325 |
Sigma Factor: |
Sigma70 Sigmulon |
Distance from start of the gene: |
78
|
Sequence: |
tattgaaagttggatttatctgcgtgtgacattttcaatattggtgattaaagttttattTcaaaattaaagggcgtgata -35 -10 +1
|
Evidence: |
[HIPP] [ICWHO] [IHBCE] [TIM]
|
Reference(s): |
[2] Eichler K., et al., 1996 [3] Huerta AM., et al., 2003
|
Type |
Transcription factor |
Function |
Promoter |
Binding Sites |
Growth Conditions |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
remote |
CaiF-L-carnitine
|
activator |
fixAp |
42181
|
42196
|
-136.5
|
aacatctgacTTTCAATATTGGTGATccataaaaca |
nd
|
[GEA], [APIORCISFBSCS], [BPP]
|
[6]
|
remote |
CaiF-L-carnitine
|
activator |
fixAp |
42200
|
42215
|
-117.5
|
tggtgatccaTAAAACAATATTGAAAatttcttttt |
nd
|
[GEA], [APIORCISFBSCS], [BPP]
|
[6]
|
proximal |
CaiF-L-carnitine
|
activator |
fixAp |
42238
|
42253
|
-79.5
|
tacgccgtgtTTTCAATATTGGTGAGgaacttaaca |
nd
|
[GEA], [APIORCISFBSCS], [BPP]
|
[6]
|
proximal |
CaiF-L-carnitine
|
activator |
fixAp |
42257
|
42272
|
-60.5
|
tggtgaggaaCTTAACAATATTGAAAgttggattta |
nd
|
[GEA], [APIORCISFBSCS], [BPP]
|
[6]
|
Type |
Transcription factor |
Function |
Promoter |
Binding Sites |
Growth Conditions |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
remote |
FNR
|
activator |
fixAp |
42121
|
42134
|
-197.5
|
cgttttttcgTTAATTTTGATTAAtaatcagttt |
nd
|
[GEA], [AIBSCS]
|
[4], [5]
|
Transcription factor |
Function |
Promoter |
Binding Sites |
Evidence (Confirmed, Strong, Weak) |
Reference(s) |
LeftPos |
RightPos |
Central Rel-Pos |
Sequence |
FNR |
activator |
fixAp |
42121
|
42134
|
-197.5
|
cgttttttcgTTAATTTTGATTAAtaatcagttt
|
[GEA]
|
[4], [5]
|
CaiF-L-carnitine |
activator |
fixAp |
42181
|
42196
|
-136.5
|
aacatctgacTTTCAATATTGGTGATccataaaaca
|
[GEA]
|
[6]
|
CRP-cyclic-AMP |
activator |
fixAp |
42188
|
42209
|
-126.5
|
gactttcaatATTGGTGATCCATAAAACAATAttgaaaattt
|
[GEA]
|
[2], [6], [7]
|
CaiF-L-carnitine |
activator |
fixAp |
42200
|
42215
|
-117.5
|
tggtgatccaTAAAACAATATTGAAAatttcttttt
|
[GEA]
|
[6]
|
CaiF-L-carnitine |
activator |
fixAp |
42238
|
42253
|
-79.5
|
tacgccgtgtTTTCAATATTGGTGAGgaacttaaca
|
[GEA]
|
[6]
|
CRP-cyclic-AMP |
activator |
fixAp |
42245
|
42266
|
-69.5
|
tgttttcaatATTGGTGAGGAACTTAACAATAttgaaagttg
|
[GEA]
|
[2], [6], [7]
|
CaiF-L-carnitine |
activator |
fixAp |
42257
|
42272
|
-60.5
|
tggtgaggaaCTTAACAATATTGAAAgttggattta
|
[GEA]
|
[6]
|