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| Operon |  |
|---|---|
| Name: | rnc-era-recO-pdxJ-acpS |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | pdxJ-acpS |
| Gene(s): | acpS, pdxJ Genome Browser M3D Gene expression COLOMBOS |
| Evidence: | [BTEI] Boundaries of transcription experimentally identified [CV(LTED/PM)] cross validation(LTED/PM) [LTED] Length of transcript experimentally determined [PM] Polar mutation |
| Reference(s): | [1] Matsunaga J., et al., 1996 |
| Promoter | |
| Name: | pdxJp |
| +1: | 2701813 |
| Distance from start of the gene: | 84 |
| Sequence: |
agacacactgcgcgccgcgaaacgctttacccgcatggcgcttaagccgtatcttggcggTaaacctttaaagagcaggga |
| Evidence: |
[RS-EPT-CBR] [TIM] |
| Reference(s): |
[1] Matsunaga J., et al., 1996 [2] Salgado H, et al., 2012 |
| Name: | rnc-era-recO-pdxJ-acpS |
| Gene(s): | acpS, pdxJ, recO, era, rnc Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | A potential RNA G-quadruplex structure, formed by guanine-rich sequences located in the coding sequence region of the gene, was identified for rnc. This structure could regulate the expression of the gene, as observed for hemL gene expression Shao X, Zhang W, Umar MI, Wong HY, Seng Z, Xie Y, Zhang Y, Yang L, Kwok CK, Deng X,2020. |
| Evidence: | [BTEI] Boundaries of transcription experimentally identified [CV(LTED/PM)] cross validation(LTED/PM) [LTED] Length of transcript experimentally determined [PM] Polar mutation |
| Reference(s): | [1] Matsunaga J., et al., 1996 |
| Promoter | |
| Name: | rncp |
| +1: | 2704223 |
| Sigma Factor: | Sigma70 Sigmulon |
| Distance from start of the gene: | 160 |
| Sequence: |
atgagataaatctcccgtggctaacgacatcccccgtcgttgtgtatagaatattcccccGaagtttaaggttggcacctc -35 -10 +1 |
| Evidence: |
[HIPP] [ICWHO] [TIM] |
| Reference(s): |
[3] Huerta AM., et al., 2003 [1] Matsunaga J., et al., 1996 |
| Name: | rnc-era |
| Gene(s): | era, rnc Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | The stability of the mRNA containing rnc and era genes is negatively affected by RNAse III Matsunaga J,1996. A potential RNA G-quadruplex structure, formed by guanine-rich sequences located in the coding sequence region of the gene, was identified for rnc. This structure could regulate the expression of the gene, as observed for hemL gene expression Shao X, Zhang W, Umar MI, Wong HY, Seng Z, Xie Y, Zhang Y, Yang L, Kwok CK, Deng X,2020. |
| Evidence: | [CV(LTED/PM)] cross validation(LTED/PM) [LTED] Length of transcript experimentally determined [PM] Polar mutation |
| Reference(s): |
[1] Matsunaga J., et al., 1996 [4] Regnier P., et al., 1990 |
| Promoter | |
| Name: | rncp |
| +1: | 2704223 |
| Sigma Factor: | Sigma70 Sigmulon |
| Distance from start of the gene: | 160 |
| Sequence: |
atgagataaatctcccgtggctaacgacatcccccgtcgttgtgtatagaatattcccccGaagtttaaggttggcacctc -35 -10 +1 |
| Evidence: |
[HIPP] [ICWHO] [TIM] |
| Reference(s): |
[3] Huerta AM., et al., 2003 [1] Matsunaga J., et al., 1996 |
| Reference(s) |
|
|---|---|
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates