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Name: | paaABCDEFGHIJK | |||||||||
Gene(s): | paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK Genome Browser M3D Gene expression COLOMBOS | |||||||||
Note(s): | Some, but not all, E. coli K-12 strains lack the ability to utilize phenylacetate; E. coli strains MG1655 and W exhibit utilization, although E. coli C does not exhibit utilization due to deletion of a large fragment that includes the paa region Ferrandez A,1998. | |||||||||
Evidence: | [BTEI] Boundaries of transcription experimentally identified [IEP] Inferred from expression pattern [ITCR] Inferred through co-regulation [PM] Polar mutation |
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Reference(s): | [1] Ferrandez A., et al., 1998 | |||||||||
Promoter | ||||||||||
Name: | paaAp | |||||||||
+1: | 1453865 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 62 | |||||||||
Sequence: |
atccgtcacagttcaaacatacaaaatttgtgattttacttaactattgtgtaactttcaTaaaacaatgtgattcgtgtt -35 -10 +1 |
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Evidence: |
[HIPP] [ICWHO] [TIM] |
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Reference(s): |
[1] Ferrandez A., et al., 1998 [2] Huerta AM., et al., 2003 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CRP-cyclic-AMP | activator | paaAp | 1453796 | 1453817 | -58.5 | tataaaaataGGGTGCGAAATCCGTCACAGTTcaaacataca | nd | [GEA], [APIORCISFBSCS], [BPP], [SM] | [5] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | IHF | activator | paaAp | 1453744 | 1453756 | -115.0 | gcgatctgtaTAGCAACTGCGGAaaacattaat | nd | [GEA], [APIORCISFBSCS], [BPP], [SM] | [5] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | PaaX | repressor | paaAp | 1453875 | 1453913 | 30.0 | taaaacaatgTGATTCGTGTTTTTAATTAATTCACGAAAACTGGAATCGtaaaggtgat | nd | [GEA], [APIORCISFBSCS], [BCE], [SM] | [5], [6] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
remote | SlyA | activator | paaAp | 1453687 | 1453688 | -177.5 | atagttaaatCgcgaatcata | nd | [GEA], [AIBSCS], [BPP] | [3], [4] |
proximal | SlyA | activator | paaAp | 1453790 | 1453791 | -74.5 | tgatttataaAaatagggtgc | nd | [GEA], [AIBSCS], [BPP] | [3], [4] |
proximal | SlyA | activator | paaAp | 1453845 | 1453846 | -19.5 | gattttacttAactattgtgt | nd | [GEA], [AIBSCS], [BPP] | [3], [4] |
Name: | paaJ |
Gene(s): | paaJ Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [IEP] Inferred from expression pattern |
Reference(s): | [7] Li Z., et al., 2019 |
Promoter | |
Name: | paaJp3 |
+1: | 1460644 |
Distance from start of the gene: | 249 |
Sequence: |
gaccgtcactgcacaaatgcttaacggtcatcaaagttgccacggcgggcagctattttcActggctgatactgcctttgc |
Evidence: |
[RSE] [TIM] |
Reference(s): | [7] Li Z., et al., 2019 |
Name: | paaJ |
Gene(s): | paaJ Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [IEP] Inferred from expression pattern |
Reference(s): | [7] Li Z., et al., 2019 |
Promoter | |
Name: | paaJp2 |
+1: | 1460771 |
Distance from start of the gene: | 122 |
Sequence: |
acgattgattttttgcgtccaggctttgccggagacaccttaactgctactgcgcaggtaCgtcatcagggcaagcaaacc |
Evidence: |
[RSE] [TIM] |
Reference(s): | [7] Li Z., et al., 2019 |
Name: | paaJ |
Gene(s): | paaJ Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [IEP] Inferred from expression pattern |
Reference(s): | [7] Li Z., et al., 2019 |
Promoter | |
Name: | paaJp1 |
+1: | 1460801 |
Distance from start of the gene: | 92 |
Sequence: |
ggagacaccttaactgctactgcgcaggtacgtcatcagggcaagcaaaccggtgtttacGacatcgaaattgttaaccaa |
Evidence: |
[RSE] [TIM] |
Reference(s): | [7] Li Z., et al., 2019 |
Reference(s) |
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