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|
| Operon |  |
|---|---|
| Name: | pheLA |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | pheLA |
| Gene(s): | pheL, pheA Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | The expression of the gene pheA is diminished under oxygen limitation Kawaguchi H, Miyagawa H, Nakamura-Tsuruta S, Takaya N, Ogino C, Kondo A,2019. |
| Evidence: | [EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined |
| Reference(s): | [1] Hudson GS., et al., 1984 |
| Promoter | |
| Name: | pheLp |
| +1: | 2737579 |
| Sigma Factor: | Sigma70 Sigmulon |
| Distance from start of the gene: | 20 |
| Sequence: |
aacgcgccttcgggcgcgttttttgttgacagcgtgaaaacagtacgggtactgtactaaAgtcacttaaggaaacaaaca -35 -10 +1 |
| Evidence: |
[COMP-AINF] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
| Reference(s): |
[1] Hudson GS., et al., 1984 [2] Huerta AM., et al., 2003 |
| Terminator(s) | |
| Type: | rho-independent |
| Sequence: | ctgatgaaaaGGTGCCGGATGATGTGAATCATCCGGCACtggattatta |
| Reference(s): | [1] Hudson GS., et al., 1984 |
| RNA cis-regulatory element | |
|---|
| Regulation, transcriptional elongation | |
| Attenuator type: | Transcriptional |
| Strand: | forward |
| Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
|---|---|---|---|---|---|
| terminator | -16.7 | 2737519 | 2737545 | tgtatcgccaACGCGCCTTCGGGCGCGTTTTTTGTTgacagcgtga | |
| terminator | -18.6 | 2737693 | 2737724 | acgaacaataAGGCCTCCCAAATCGGGGGGCCTTTTTTATTgataacaaaa | |
| anti-terminator | -21.9 | 2737648 | 2737703 | tcccctgaatGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAaatcgggggg | |
| anti-anti-terminator | -14.44 | 2737620 | 2737670 | ccgtttttctTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAacagaatgcg |
| Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
| REGULATION, RNA cis-regulatory element: | |
| Rfam type: | Cis-reg; leader |
| Strand: | forward |
| Description | Rfam score | Left Pos | Right Pos | Sequence (RNA-strand) | |
|---|---|---|---|---|---|
| Phenylalanine leader peptide | 130.8 | 2737598 | 2737723 | aggaaacaaaCAUGAAACACAUACCGUUUUUCUUCGCAUUCUUUUUUACCUUCCCCUGAAUGGGAGGCGUUUCGUCGUGUGAAACAGAAUGCGAAGACGAACAAUAAGGCCUCCCAAAUCGGGGGGCCUUUUUUAUugauaacaaa |
| Notes: "The provied "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appears as the reverse complement of the sequence delimited by LeftPos-RightPos" |
| Reference(s) |
|
|---|---|
[COMP-AINF] Inferred computationally without human oversight