RegulonDB RegulonDB 10.8: Operon Form
   

ppk-ppx operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ppk-ppx
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit       
Name: ppk-ppx
Gene(s): ppk, ppx   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ITC] Inferred through co-regulation
Reference(s): [1] Maciag A., et al., 2011
Promoter
Name: ppkp
+1: 2622977
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 67
Sequence: attcacctgtaaatcgcaagctccagcagtttttttcccccttttctggcatagttggacAtctgccaatattgctcgcca
                                                  -10       +1                   
Evidence: [HTIM]
Reference(s): [1] Maciag A., et al., 2011


Transcription unit       
Name: ppk-ppx
Gene(s): ppk, ppx   Genome Browser M3D Gene expression COLOMBOS
Evidence: [PM] Polar mutation
Reference(s): [2] Akiyama M., et al., 1993


RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: forward
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -12.7 2622890 2622915 taattaaagcGCCAGCTCTGCCGCTGGCGTTTTTCaattcacctg
  anti-terminator -11.3 2622851 2622898 gccgccgcagGGCTACGCTGCCGACGAGTAATACCCCCGTAATTAAAGCGCCAGCTCtgccgctggc
  anti-anti-terminator -19.1 2622816 2622862 cacgaaaacgCCGCGTGGCTGGATGGTCAACGTCTGCCGCCGCAGGGCTACGCTGCcgacgagtaa
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"





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