RegulonDB RegulonDB 10.9: Operon Form

rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ operon and associated TUs in Escherichia coli K-12 genome

Name: rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit       
Name: rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ
Synonym(s): rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-prlA-rpmJ, spc
Gene(s): rpmJ, secY, rplO, rpmD, rpsE, rplR, rplF, rpsH, rpsN, rplE, rplX, rplN   Genome Browser M3D Gene expression COLOMBOS
Evidence: [PAGTSBP] Products of adjacent genes in the same biological process
Reference(s): [1] Cerretti DP., et al., 1983
Name: rplNp
+1: 3448222
Distance from start of the gene: 73
Sequence: ctcagaaatgagccgtttattttttctacccatatccttgaagcggtgttataatgccgcGccctcgatatggggattttt
Evidence: [CV(RPF/RS-EPT-CBR)]
Reference(s): [2] Post LE., et al., 1978
[3] Post LE., et al., 1978
[4] Salgado H, et al., 2012
Allosteric regulation of RNA-polymerase
  Regulator Function Promoter target of RNApol Growth Conditions Note Evidence Reference
  DksA-ppGpp inhibition rplNp nd Together ppGpp and DksA can inhibit more strongly the transcription initiation from the ribosomal protein promoter in vitro and in vivo Lemke JJ,2011 [APPH]
Evidence: [APPH] Assay of protein purified to homogeneity
[GEA] Gene expression analysis
[IMP] Inferred from mutant phenotype
Reference(s): [5] Lemke JJ., et al., 2011

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: reverse
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -20.0 3448256 3448291 tctcaatacgAATAAACGGCTCAGAAATGAGCCGTTTATTTTTTCtacccatatc
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"