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Name: | tufA |
Gene(s): | tufA Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [LTED] Length of transcript experimentally determined |
Reference(s): | [1] Zengel JM., et al., 1990 |
Promoter | |
Name: | tufAp2 |
+1: | 3471583 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 254 |
Sequence: |
ggaagagaacaccggtgacgttatcggtgacttgagccgtcgtcgtggtatgctcaaaggTcaggaatctgaagttactgg -35 -10 +1 |
Note(s): | T1 nuclease mapping was used to identified the tufAp2 promoter; however, the exact position was not determined Zengel JM,1990 |
Evidence: |
[HIPP] [ICWHO] [IHBCE] [RS-EPT-CBR] [TIM] |
Reference(s): |
[2] Huerta AM., et al., 2003 [3] Salgado H, et al., 2012 [4] Zengel JM., et al., 1984 [1] Zengel JM., et al., 1990 |
Name: | tufA |
Gene(s): | tufA Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [LTED] Length of transcript experimentally determined |
Reference(s): | [1] Zengel JM., et al., 1990 |
Promoter | |
Name: | tufAp1 |
+1: | 3471724 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 395 |
Sequence: |
tctgcacttcggttcttaccatgacgttgactcctctgaactggcgtttaaactggctgcTtctatcgcctttaaagaagg -35 -10 +1 |
Note(s): | T1 nuclease mapping was used to identified the tufAp1 promoter; however, the exact position was not determined Zengel JM,1990 |
Evidence: |
[HIPP] [ICWHO] [IEP] [IHBCE] [TIM] |
Reference(s): |
[2] Huerta AM., et al., 2003 [5] Zaslaver A., et al., 2006 [4] Zengel JM., et al., 1984 [1] Zengel JM., et al., 1990 |
Name: | fusA-tufA |
Gene(s): | tufA, fusA Genome Browser M3D Gene expression COLOMBOS |
Note(s): | FNR represses tufA gene expression under anaerobiosis, but it is not known which transcription unit is affected, or even if this regulation is direct or indirect Salmon K,2003. |
Evidence: | [IC] Inferred by curator |
Promoter | |
Name: | fusAp |
+1: | 3473685 |
Sigma Factor: | Sigma24 Sigmulon |
Distance from start of the gene: | 171 |
Sequence: |
gataaatccatggctctgcgcctggcgaacgaactttctgatgctgcagaaaacaaaggtActgcagttaagaaacgtgaa -35 -10 +1 |
Evidence: |
[AIBSCS] [AIPP] [ICWHO] [TIM] |
Reference(s): |
[2] Huerta AM., et al., 2003 [6] Rezuchova B., et al., 2003 [7] Rhodius VA., et al., 2005 |
Name: | rpsLG-fusA-tufA |
Gene(s): | tufA, fusA, rpsG, rpsL Genome Browser M3D Gene expression COLOMBOS |
Note(s): | FNR represses tufA gene expression under anaerobiosis, but it is not known which transcription unit is affected, or even if this regulation is direct or indirect Salmon K,2003. |
Reference(s): |
[8] Johanson U., et al., 1992 [9] Post LE., et al., 1978 [10] Saito K., et al., 1994 |
Promoter | |
Name: | rpsLp |
+1: | 3474621 |
Distance from start of the gene: | 69 |
Sequence: |
gtgatggcgggatcgttgtatatttcttgacaccttttcggcatcgccctaaaattcggcGtcctcatattgtgtgaggac |
Evidence: | [RPF] |
Reference(s): |
[11] Post LE., et al., 1978 [9] Post LE., et al., 1978 |
Evidence: |
[APPH] Assay of protein purified to homogeneity [GEA] Gene expression analysis [IMP] Inferred from mutant phenotype |
Reference(s): | [12] Lemke JJ., et al., 2011 |
RNA cis-regulatory element | ![]() |
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Regulation, transcriptional elongation | |
Attenuator type: | Transcriptional |
Strand: | reverse |
Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
---|---|---|---|---|---|
terminator | -15.2 | 3474593 | 3474623 | ctaaaattcgGCGTCCTCATATTGTGTGAGGACGTTTTATtacgtgttta | |
terminator | -19.7 | 3471349 | 3471374 | ccaaagtcccGTGCTCTCTCCTGAAGGGGAGAGCActatagtaag | |
anti-terminator | -5.6 | 3474619 | 3474653 | tatatttcttGACACCTTTTCGGCATCGCCCTAAAATTCGGCGTcctcatattg | |
anti-anti-terminator | -9.1 | 3474637 | 3474679 | atggcctggtGATGGCGGGATCGTTGTATATTTCTTGACACCTTTTCGGCATcgccctaaaa |
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
Reference(s) |
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