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Name: | stpA | ||||||||||
Gene(s): | stpA Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Note(s): | Repression of the stpA gene by H-NS is significantly more effective when a downstream sequence encompassing the stpA coding region is present. It is possible that StpA acts on a transcriptional level or that the RNA chaperone StpA binds to its mRNA Gueune H,2008. Lrp may partly act to overcome the negative effect of HNS. Lrp activates the transcription of stpA in minimal medium; in rich medium the lower level and more transient expression of stpA is independent of Lrp. |
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Evidence: | [EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined | ||||||||||
Reference(s): |
[1] Free A., et al., 1997 [2] Sonden B., et al., 1996 |
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Promoter | |||||||||||
Name: | stpAp1 | ||||||||||
+1: | 2798536 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 41 | ||||||||||
Sequence: |
gactgtaaatagattaaattttgtggaaatataataagtgatcgcttacactacgcgacgAaatactttttttgttttggc -35 -10 +1 |
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Evidence: |
[COMP-AINF] [COMP-HINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
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Reference(s): |
[1] Free A., et al., 1997 [3] Huerta AM., et al., 2003 [2] Sonden B., et al., 1996 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
nd | H-NS | repressor | stpAp1 | nd | nd | nd | nd | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [1], [2] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
nd | StpA | repressor | stpAp1 | nd | nd | nd | nd | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS] | W | [6] |
Name: | stpA |
Gene(s): | stpA Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined |
Reference(s): |
[1] Free A., et al., 1997 [2] Sonden B., et al., 1996 |
Promoter | |
Name: | stpAp2 |
+1: | 2798556 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 61 |
Sequence: |
gctgaaataatctcgcgcaggactgtaaatagattaaattttgtggaaatataataagtgAtcgcttacactacgcgacga -10 +1 |
Evidence: |
[COMP-HINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
Reference(s): |
[1] Free A., et al., 1997 [2] Sonden B., et al., 1996 |
Name: | stpA |
Gene(s): | stpA Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined |
Reference(s): |
[1] Free A., et al., 1997 [2] Sonden B., et al., 1996 |
Promoter | |
Name: | stpAp3 |
+1: | 2798578 |
Distance from start of the gene: | 83 |
Sequence: |
ctgagagtttcagaaaataacagctgaaataatctcgcgcaggactgtaaatagattaaaTtttgtggaaatataataagt |
Evidence: | [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
Reference(s): | [2] Sonden B., et al., 1996 |
Reference(s) |
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