RegulonDB RegulonDB 10.8: Operon Form

trmA operon and associated TUs in Escherichia coli K-12 genome

Name: trmA
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit          
Name: trmA
Gene(s): trmA   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
[LTED] Length of transcript experimentally determined
Reference(s): [1] Gustafsson C., et al., 1991
Name: trmAp
+1: 4163295
Sigma Factor: Sigma32 Sigmulon
Distance from start of the gene: 25
Sequence: ctcacaaataggaattcatcaagatctggacatctgatgagcaatccctacaatcgccgcGtactttaatttttcaggata
                           -35                -10           +1                   
Note(s): It is possible that σ32 regulates the trmA promoter. Near to and upstream from the -10 region is a sequence, TCCC, in the trmA promoter that is present in heat shock σ32 promoters Gustafsson C,1991.
Evidence: [HIPP]
Reference(s): [1] Gustafsson C., et al., 1991
Type: rho-independent
Sequence: gtaatcggtaTTATGCCGGATGCTGGCGCATCCGGCATgggttttact
Reference(s): [1] Gustafsson C., et al., 1991
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal Fis activator trmAp 4163335 4163349 -47.0 gtagctcacaAATAGGAATTCATCAagatctggac nd [APIORCISFBSCS] [1]