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Name: | tonB | ||||||||||
Synonym(s): | OP00228 | ||||||||||
Gene(s): | tonB Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Note(s): | Expression of tonB, along with that of other genes also regulated by Fur, is reduced under Zn excess Xu Z,2019. | ||||||||||
Evidence: | [EXP-IDA-BOUNDARIES-DEFINED] Boundaries of transcription experimentally identified [EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined |
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Reference(s): |
[1] Postle K., et al., 1983 [2] Young GM., et al., 1994 |
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Promoter | |||||||||||
Name: | tonBp | ||||||||||
+1: | 1311054 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 35 | ||||||||||
Sequence: |
ttcactgatcctgatcgtcttgccttattgaatatgattgctatttgcatttaaaatcgaGacctggtttttctactgaaa -35 -10 +1 |
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Evidence: |
[COMP-AINF] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
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Reference(s): |
[3] Huerta AM., et al., 2003 [4] Lisser S., et al., 1993 [1] Postle K., et al., 1983 |
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Terminator(s) | |||||||||||
Type: | rho-independent | ||||||||||
Sequence: | gtaagcagaaAGTCAAAAGCCTCCGACCGGAGGCTTTTGACTattactcaac | ||||||||||
Reference(s): | [1] Postle K., et al., 1983 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | Fur-Fe2+ | activator | tonBp | 1311020 | 1311038 | -25.0 | gtcttgccttATTGAATATGATTGCTATTtgcatttaaa | nd | [COMP-AINF-SIMILAR-TO-CONSENSUS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | nd | [5] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
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LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | Fur-Fe2+ | repressor | tonBp | 1311026 | 1311044 | -19.0 | ccttattgaaTATGATTGCTATTTGCATTtaaaatcgag | nd | [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | nd | [5] |
proximal | Fur-Fe2+ | repressor | tonBp | 1311030 | 1311048 | -15.0 | attgaatatgATTGCTATTTGCATTTAAAatcgagacct | nd | [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | nd | [5] |
proximal | Fur-Fe2+ | repressor | tonBp | 1311070 | 1311088 | 26.0 | gtttttctacTGAAATGATTATGACTTCAatgacccttg | nd | [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS] | nd | nd |
Reference(s) |
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