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Name: | mglAC | ||||||||||
Gene(s): | mglC, mglA Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Evidence: | [EXP-IEP-COREGULATION] Inferred through co-regulation | ||||||||||
Reference(s): | [1] Harayama S., et al., 1983 | ||||||||||
Promoter | |||||||||||
Name: | mglAp | ||||||||||
+1: | 2239391 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 102 | ||||||||||
Sequence: |
ggtgcggctgatggcaccaactggaaaatcgacaacaaagtggtccgcgtaccttatgttGgcgtagataaagacaacctg -35 +10 |
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Evidence: |
[COMP-AINF] [COMP-AINF-POSITIONAL-IDENTIFICATION] |
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Reference(s): | [2] Huerta AM., et al., 2003 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
nd | Fis | repressor | mglAp | nd | nd | nd | nd | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS] | W | [3] |
Name: | mglBAC | ||||||||||
Synonym(s): | OP00230, mglBAK | ||||||||||
Gene(s): | mglC, mglA, mglB Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Note(s): | Under NlpE outer membrane lipoprotein overexpression, the transcription of the mglB gene is decreased Raivio TL,2013 mglBAC, among other genes involved in carbon source transport and metabolism, were downregulated in two MG1655 lysogens carrying closely related Stx2a phages O104 and PA8 1208335|. A transcript that contains mglB and mglA is decreased after σE induction, as observed in high-throughput analysis of gene expression Lacoux C,2020. |
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Evidence: | [EXP-IEP-COREGULATION] Inferred through co-regulation [EXP-IMP-POLAR-MUTATION] Polar mutation |
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Reference(s): |
[1] Harayama S., et al., 1983 [4] Hogg RW., et al., 1991 |
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Promoter | |||||||||||
Name: | mglBp | ||||||||||
+1: | 2240566 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 218 | ||||||||||
Sequence: |
cgctttcaatctgtgagtgatttcacagtatcttaacaatgtgatagctatgattgcaccGttttaacgttgtaacccgta -35 -10 +1 |
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Evidence: |
[COMP-AINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IMP] |
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Reference(s): |
[4] Hogg RW., et al., 1991 [2] Huerta AM., et al., 2003 [5] Notley-McRobb L., et al., 2002 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | CRP-cyclic-AMP | activator | mglBp | 2240597 | 2240618 | -41.5 | accgctttcaATCTGTGAGTGATTTCACAGTAtcttaacaat | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION] | C | [7], [9], [10], [11], [12] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
nd | FlhDC | repressor | mglBp | nd | nd | nd | nd | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS] | W | [13] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | GalR | repressor | mglBp | 2240618 | 2240633 | -59.5 | aaatcaggcgATGTAACCGCTTTCAAtctgtgagtg | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] | W | [6], [7] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | GalS | repressor | mglBp | 2240618 | 2240633 | -59.5 | aaatcaggcgATGTAACCGCTTTCAAtctgtgagtg | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] | W | [6], [7], [8] |
Name: | mglBAC | ||||||||||
Synonym(s): | OP00230, mglBAK | ||||||||||
Gene(s): | mglC, mglA, mglB Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Note(s): | Under NlpE outer membrane lipoprotein overexpression, the transcription of the mglB gene is decreased Raivio TL,2013 mglBAC, among other genes involved in carbon source transport and metabolism, were downregulated in two MG1655 lysogens carrying closely related Stx2a phages O104 and PA8 1208335|. A transcript that contains mglB and mglA is decreased after σE induction, as observed in high-throughput analysis of gene expression Lacoux C,2020. |
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Evidence: | [EXP-IEP-COREGULATION] Inferred through co-regulation [EXP-IMP-POLAR-MUTATION] Polar mutation |
||||||||||
Reference(s): |
[1] Harayama S., et al., 1983 [4] Hogg RW., et al., 1991 |
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Promoter | |||||||||||
Name: | mglBp2 | ||||||||||
+1: | 2240566 | ||||||||||
Sigma Factor: | Sigma38 Sigmulon | ||||||||||
Distance from start of the gene: | 218 | ||||||||||
Sequence: |
cgctttcaatctgtgagtgatttcacagtatcttaacaatgtgatagctatgattgcaccGttttaacgttgtaacccgta -35 -10 +1 |
||||||||||
Evidence: |
[COMP-AINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IMP] |
||||||||||
Reference(s): |
[4] Hogg RW., et al., 1991 [2] Huerta AM., et al., 2003 [5] Notley-McRobb L., et al., 2002 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | CRP-cyclic-AMP | activator | mglBp2 | 2240597 | 2240618 | -41.5 | accgctttcaATCTGTGAGTGATTTCACAGTAtcttaacaat | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION] | C | [7], [9], [10], [11], [12] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
nd | FlhDC | repressor | mglBp2 | nd | nd | nd | nd | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS] | W | [13] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | GalR | repressor | mglBp2 | 2240618 | 2240633 | -59.5 | aaatcaggcgATGTAACCGCTTTCAAtctgtgagtg | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] | W | [6], [7] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | GalS | repressor | mglBp2 | 2240618 | 2240633 | -59.5 | aaatcaggcgATGTAACCGCTTTCAAtctgtgagtg | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] | W | [6], [7], [8] |
Reference(s) |
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