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Name: | gntK | |||||||||
Gene(s): | gntK Genome Browser M3D Gene expression COLOMBOS | |||||||||
Evidence: | [BTEI] Boundaries of transcription experimentally identified | |||||||||
Reference(s): | [1] Izu H., et al., 1997 | |||||||||
Promoter | ||||||||||
Name: | gntKp | |||||||||
+1: | 3577645 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 53 | |||||||||
Sequence: |
cttatacacttaaggcatggatggatattgcttctgatattgtccggctggacaatgttaCcgataacagttacccgtaac -35 -10 +1 |
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Evidence: |
[ICWHO] [TIM] |
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Reference(s): |
[2] Huerta AM., et al., 2003 [1] Izu H., et al., 1997 [3] Tong S., et al., 1996 |
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Terminator(s) | ||||||||||
Type: | rho-independent | |||||||||
Sequence: | catgactaaaAACAGCAGCAGTAAAACAGACCCTACTGCTGTTaaaacaagcg | |||||||||
Reference(s): | [1] Izu H., et al., 1997 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CRP-cyclic-AMP | activator | gntKp | 3577703 | 3577724 | -68.5 | ttaagcccacAAATTTGAAGTAGCTCACACTTatacacttaa | nd | [GEA], [APIORCISFBSCS], [BCE] | [1] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | GntR | repressor | gntKp | 3577621 | 3577640 | 15.5 | tgttaccgatAACAGTTACCCGTAACATTTttaattcttg | nd | [GEA], [AIBSCS], [APIORCISFBSCS], [BPP], [SM] | [4] |
proximal | GntR | repressor | gntKp | 3577634 | 3577653 | 2.5 | tccggctggaCAATGTTACCGATAACAGTTacccgtaaca | nd | [GEA], [AIBSCS], [APIORCISFBSCS], [BPP], [SM] | [1], [4] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | IdnR-5-dehydro-D-gluconate | repressor | gntKp | 3577623 | 3577638 | 15.5 | ttaccgataaCAGTTACCCGTAACATttttaattct | nd | [GEA] | [4] |
proximal | IdnR-5-dehydro-D-gluconate | repressor | gntKp | 3577636 | 3577651 | 2.5 | cggctggacaATGTTACCGATAACAGttacccgtaa | nd | [GEA] | [4] |
Name: | gntKU | |||||||||
Synonym(s): | OP00323 | |||||||||
Gene(s): | gntU, gntK Genome Browser M3D Gene expression COLOMBOS | |||||||||
Evidence: | [BTEI] Boundaries of transcription experimentally identified [LTED] Length of transcript experimentally determined |
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Reference(s): |
[1] Izu H., et al., 1997 [3] Tong S., et al., 1996 |
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Promoter | ||||||||||
Name: | gntKp | |||||||||
+1: | 3577645 | |||||||||
Sigma Factor: | Sigma70 Sigmulon | |||||||||
Distance from start of the gene: | 53 | |||||||||
Sequence: |
cttatacacttaaggcatggatggatattgcttctgatattgtccggctggacaatgttaCcgataacagttacccgtaac -35 -10 +1 |
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Evidence: |
[ICWHO] [TIM] |
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Reference(s): |
[2] Huerta AM., et al., 2003 [1] Izu H., et al., 1997 [3] Tong S., et al., 1996 |
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Terminator(s) | ||||||||||
Type: | rho-independent | |||||||||
Sequence: | tcgaaaagaaCCCGGTAGCGTCACAACTACCGGGcgaacaaact | |||||||||
Reference(s): |
[1] Izu H., et al., 1997 [3] Tong S., et al., 1996 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | CRP-cyclic-AMP | activator | gntKp | 3577703 | 3577724 | -68.5 | ttaagcccacAAATTTGAAGTAGCTCACACTTatacacttaa | nd | [GEA], [APIORCISFBSCS], [BCE] | [1] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | GntR | repressor | gntKp | 3577621 | 3577640 | 15.5 | tgttaccgatAACAGTTACCCGTAACATTTttaattcttg | nd | [GEA], [AIBSCS], [APIORCISFBSCS], [BPP], [SM] | [4] |
proximal | GntR | repressor | gntKp | 3577634 | 3577653 | 2.5 | tccggctggaCAATGTTACCGATAACAGTTacccgtaaca | nd | [GEA], [AIBSCS], [APIORCISFBSCS], [BPP], [SM] | [1], [4] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence (Confirmed, Strong, Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | |||||||
proximal | IdnR-5-dehydro-D-gluconate | repressor | gntKp | 3577623 | 3577638 | 15.5 | ttaccgataaCAGTTACCCGTAACATttttaattct | nd | [GEA] | [4] |
proximal | IdnR-5-dehydro-D-gluconate | repressor | gntKp | 3577636 | 3577651 | 2.5 | cggctggacaATGTTACCGATAACAGttacccgtaa | nd | [GEA] | [4] |
Name: | gntR |
Gene(s): | gntR Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified [LTED] Length of transcript experimentally determined |
Reference(s): | [3] Tong S., et al., 1996 |
Promoter | |
Name: | gntRp2 |
+1: | 3578818 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 92 |
Sequence: |
gcttccggggttttgccgcgtcgttagcacaatgcgatgcaattgatttagtgtatatctAataattgtaaacaagcactg -35 -10 +1 |
Evidence: |
[HIPP] [ICWHO] [TIM] |
Reference(s): |
[2] Huerta AM., et al., 2003 [3] Tong S., et al., 1996 |
Terminator(s) | |
Type: | rho-independent |
Sequence: | aagaattaaaAATGTTACGGGTAACTGTTATCGGTAACATTgtccagccgg |
Name: | gntR |
Gene(s): | gntR Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified [LTED] Length of transcript experimentally determined |
Reference(s): | [3] Tong S., et al., 1996 |
Promoter | |
Name: | gntRp3 |
+1: | 3578862 |
Distance from start of the gene: | 136 |
Sequence: |
tttttgcaggcttcctcgctcgctccggtcgcgtgctgatgtacgcttccggggttttgcCgcgtcgttagcacaatgcga |
Evidence: |
[HIPP] [TIM] |
Reference(s): | [3] Tong S., et al., 1996 |
Terminator(s) | |
Type: | rho-independent |
Sequence: | aagaattaaaAATGTTACGGGTAACTGTTATCGGTAACATTgtccagccgg |
Name: | gntR |
Gene(s): | gntR Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified [LTED] Length of transcript experimentally determined |
Reference(s): | [3] Tong S., et al., 1996 |
Promoter | |
Name: | gntRp4 |
+1: | 3578880 |
Distance from start of the gene: | 154 |
Sequence: |
gcatctttgaagcctgcctttttgcaggcttcctcgctcgctccggtcgcgtgctgatgtAcgcttccggggttttgccgc |
Evidence: | [TIM] |
Reference(s): | [3] Tong S., et al., 1996 |
Terminator(s) | |
Type: | rho-independent |
Sequence: | aagaattaaaAATGTTACGGGTAACTGTTATCGGTAACATTgtccagccgg |
Name: | gntU |
Gene(s): | gntU Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified [IC] Inferred by curator |
Reference(s): |
[2] Huerta AM., et al., 2003 [1] Izu H., et al., 1997 |
Terminator(s) | |
Type: | rho-independent |
Sequence: | tcgaaaagaaCCCGGTAGCGTCACAACTACCGGGcgaacaaact |
Reference(s): |
[1] Izu H., et al., 1997 [3] Tong S., et al., 1996 |
Name: | gntRKU |
Gene(s): | gntU, gntK, gntR Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [BTEI] Boundaries of transcription experimentally identified [LTED] Length of transcript experimentally determined |
Reference(s): | [1] Izu H., et al., 1997 |
Terminator(s) | |
Type: | rho-independent |
Sequence: | tcgaaaagaaCCCGGTAGCGTCACAACTACCGGGcgaacaaact |
Reference(s): |
[1] Izu H., et al., 1997 [3] Tong S., et al., 1996 |
Reference(s) |
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