RegulonDB RegulonDB 11.1: Operon Form
   

ampDE operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ampDE
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: ampDE
Gene(s): ampD, ampE   Genome Browser M3D Gene expression COLOMBOS
Reference(s): [1] Honore N., et al., 1989
Promoter
Name: ampD
+1: 118703
Distance from start of the gene: 30
Sequence: catgttaaaactccagatagctaacgaatcataaggtagaaacatgctactctgaaccggGtattagcaccacatataagg
Evidence: [EXP-IDA-HPT-TRANSCR-INIT-M-RACE-MAP]
Reference(s): [2] Raghavan R., et al., 2011
TF binding sites (TFBSs)
[CRP,-] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal CRP-cyclic-AMP repressor ampD 118698 118720 6.5 gctactctgaACCGGGTATTAGCACCACATATAaggagatcct nd [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [2]


Evidence    

 [EXP-IDA-HPT-TRANSCR-INIT-M-RACE-MAP] High-throughput transcription initiation mapping

 [COMP-HINF-SIMILAR-TO-CONSENSUS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence.

 [EXP-IEP-GENE-EXPRESSION-ANALYSIS] Gene expression analysis

 [COMP-AINF-SIMILAR-TO-CONSENSUS] Automated inference based on similarity to consensus sequences


Reference(s)    

 [1] Honore N., Nicolas MH., Cole ST., 1989, Regulation of enterobacterial cephalosporinase production: the role of a membrane-bound sensory transducer., Mol Microbiol 3(8):1121-30

 [2] Raghavan R., Sage A., Ochman H., 2011, Genome-wide identification of transcription start sites yields a novel thermosensing RNA and new cyclic AMP receptor protein-regulated genes in Escherichia coli., J Bacteriol 193(11):2871-4

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