|
|
| Operon |  |
|---|---|
| Name: | cobUST |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | cobUST |
| Gene(s): | cobT, cobS, cobU Genome Browser M3D Gene expression COLOMBOS |
| Evidence: | [EXP-IDA-BOUNDARIES-DEFINED] Boundaries of transcription experimentally identified |
| Reference(s): | [1] Lawrence JG., et al., 1995 |
| Promoter | |
| Name: | cobUp1 |
| +1: | 2065874 |
| Sigma Factor: | Sigma70 Sigmulon |
| Distance from start of the gene: | 110 |
| Sequence: |
aagtctggctattccgtaatgccatcttatttcgtaatggattgagaatgctggatttttAattatattacgcgcagtatt -35 -10 +1 |
| Evidence: |
[COMP-AINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA-RNA-POLYMERASE-FOOTPRINTING] |
| Reference(s): |
[2] Huerta AM., et al., 2003 [1] Lawrence JG., et al., 1995 |
| Name: | cobUST |
| Gene(s): | cobT, cobS, cobU Genome Browser M3D Gene expression COLOMBOS |
| Evidence: | [EXP-IDA-BOUNDARIES-DEFINED] Boundaries of transcription experimentally identified |
| Reference(s): | [1] Lawrence JG., et al., 1995 |
| Promoter | |
| Name: | cobUp2 |
| +1: | 2065972 |
| Sigma Factor: | Sigma70 Sigmulon |
| Distance from start of the gene: | 208 |
| Sequence: |
gttgttccggcagtagcattaattcattatctgaatgaaatgtgtcaatccacagaaaccGctgtcaatgacgcattttgt -35 -10 +1 |
| Note(s): | The cobUp2 promoter is induced by cobinamide Lawrence JG,1995 |
| Evidence: |
[COMP-AINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
| Reference(s): |
[2] Huerta AM., et al., 2003 [1] Lawrence JG., et al., 1995 |
| RNA cis-regulatory element | |
|---|
| Regulation, transcriptional elongation | |
| Attenuator type: | Transcriptional |
| Strand: | reverse |
| Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
|---|---|---|---|---|---|
| terminator | -10.4 | 2065952 | 2065992 | ctgaatgaaaTGTGTCAATCCACAGAAACCGCTGTCAATGACGCATTTTGtcggacgtta | |
| anti-terminator | -4.9 | 2065988 | 2066017 | tccggcagtaGCATTAATTCATTATCTGAATGAAATGTGtcaatccaca | |
| anti-anti-terminator | -13.7 | 2066002 | 2066060 | caatagcctgGATTTCAGAACACAATGCCCGTTTGCTGGTTGTTCCGGCAGTAGCATTAATTCATTATctgaatgaaa |
| Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
| Reference(s) |
|
|---|---|
[COMP-AINF] Inferred computationally without human oversight