RegulonDB RegulonDB 10.9: Operon Form
   

hipBA operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: hipBA
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: hipBA
Gene(s): hipA, hipB   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ITCR] Inferred through co-regulation
Reference(s): [1] Black DS., et al., 1994
[2] Black DS., et al., 1991
Promoter
Name: hipBp
+1: 1592482
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 40
Sequence: gtagagcggataagatgtgtttccagattgacttatcctcactaaaggataaaacttataAtatccccttaagcggataaa
                            -35                   -10       +1                   
Note(s): Taking into account the sequence and the properties of the promoter , such as its location and codon usage, hipB and hipA are regarded as weakly expressed genes Black DS,1991.
Evidence: [ICWHO]
[TIM]
Reference(s): [2] Black DS., et al., 1991
[3] Huerta AM., et al., 2003
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal HipAB repressor hipBp 1592463 1592482 10.5 taaaacttatAATATCCCCTTAAGCGGATAAacttgctgtg nd [APIORCISFBSCS], [BPP], [GEA] [1]
proximal HipAB repressor hipBp 1592491 1592511 -18.5 tccagattgaCTTATCCTCACTAAAGGATAAaacttataat nd [APIORCISFBSCS], [BPP], [GEA] [1]
proximal HipAB repressor hipBp 1592530 1592549 -57.5 tatcgcagcgTTTATCCCGTAGAGCGGATAAgatgtgtttc nd [APIORCISFBSCS], [BPP], [GEA] [1]
proximal HipAB repressor hipBp 1592558 1592577 -85.5 aatcctccttTTTATCCGCGATCGCGGATATcgcagcgttt nd [APIORCISFBSCS], [BPP], [GEA] [1]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal HipB repressor hipBp 1592463 1592482 10.5 taaaacttatAATATCCCCTTAAGCGGATAAacttgctgtg nd [APIORCISFBSCS], [BPP], [GEA] [1]
proximal HipB repressor hipBp 1592491 1592511 -18.5 tccagattgaCTTATCCTCACTAAAGGATAAaacttataat nd [APIORCISFBSCS], [BPP], [GEA] [1]
proximal HipB repressor hipBp 1592530 1592549 -57.5 tatcgcagcgTTTATCCCGTAGAGCGGATAAgatgtgtttc nd [APIORCISFBSCS], [BPP], [GEA] [1]
proximal HipB repressor hipBp 1592558 1592577 -85.5 aatcctccttTTTATCCGCGATCGCGGATATcgcagcgttt nd [APIORCISFBSCS], [BPP], [GEA] [1]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote IHF activator hipBp 1592593 1592605 -117.0 ttcaaacggcGCATCAACGCCTTAtttaaatcct nd [APIORCISFBSCS] [1]





RegulonDB