RegulonDB RegulonDB 10.9: Operon Form
   

ssb operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: ssb
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: ssb
Synonym(s): OP00091
Gene(s): ssb   Genome Browser M3D Gene expression COLOMBOS
Reference(s): [1] Schaefer TS., et al., 1991
Promoter
Name: ssbp3
+1: 4274011
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 114
Sequence: attgacctgaatgaatatacagtattggaatgcattacccggagtgttgtgtaacaatgtCtggccaggtttgtttcccgg
                              -35                    -10    +1                   
Evidence: [ICWHO]
[TIM]
Reference(s): [2] Brandsma JA., et al., 1985
[3] Huerta AM., et al., 2003
[4] Ogasawara H., et al., 2005
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal ArcA-Phosphorylated repressor ssbp3 4273931 4273945 -72.5 ggcgatcacaAACGGTTAATTATGACacaaattgac nd [APIORCISFBSCS], [BPP], [GEA] [4]
proximal ArcA-Phosphorylated repressor ssbp3 4273994 4274008 -9.5 attacccggaGTGTTGTGTAACAATGtctggccagg nd [APIORCISFBSCS], [BPP], [GEA] [4]
remote ArcA-Phosphorylated repressor ssbp3 4274034 4274048 31.5 tttcccggaaCCGAGGTCACAACATAgtaaaagcgc nd [APIORCISFBSCS], [BPP], [GEA] [4]
remote ArcA-Phosphorylated repressor ssbp3 4274077 4274091 74.5 aatggtacaaTCGCGCGTTTACACTTattcagaacg nd [APIORCISFBSCS], [BPP], [GEA] [4]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal LexA repressor ssbp3 4273955 4273974 -46.5 acacaaattgACCTGAATGAATATACAGTATtggaatgcat nd [APIORCISFBSCS], [BCE] nd


Transcription unit          
Name: ssb
Gene(s): ssb   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
Reference(s): [2] Brandsma JA., et al., 1985
Promoter
Name: ssbp2
+1: 4274080
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 45
Sequence: tttgtttcccggaaccgaggtcacaacatagtaaaagcgctattggtaatggtacaatcgCgcgtttacacttattcagaa
                               -35                   -10    +1                   
Evidence: [ICWHO]
[TIM]
Reference(s): [2] Brandsma JA., et al., 1985
[3] Huerta AM., et al., 2003
[4] Ogasawara H., et al., 2005
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote ArcA-Phosphorylated repressor ssbp2 4273931 4273945 -141.5 ggcgatcacaAACGGTTAATTATGACacaaattgac nd [APIORCISFBSCS], [BPP], [GEA] [4]
proximal ArcA-Phosphorylated repressor ssbp2 4273994 4274008 -78.5 attacccggaGTGTTGTGTAACAATGtctggccagg nd [APIORCISFBSCS], [BPP], [GEA] nd
proximal ArcA-Phosphorylated repressor ssbp2 4274034 4274048 -38.5 tttcccggaaCCGAGGTCACAACATAgtaaaagcgc nd [APIORCISFBSCS], [BPP], [GEA] [4]
proximal ArcA-Phosphorylated repressor ssbp2 4274077 4274091 5.5 aatggtacaaTCGCGCGTTTACACTTattcagaacg nd [APIORCISFBSCS], [BPP], [GEA] [4]


Transcription unit          
Name: ssb
Gene(s): ssb   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
Reference(s): [2] Brandsma JA., et al., 1985
Promoter
Name: ssbp1
+1: 4274092
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 33
Sequence: aaccgaggtcacaacatagtaaaagcgctattggtaatggtacaatcgcgcgtttacactTattcagaacgatttttttca
                               -35                     -10  +1                   
Evidence: [ICWHO]
[TIM]
Reference(s): [2] Brandsma JA., et al., 1985
[3] Huerta AM., et al., 2003
[4] Ogasawara H., et al., 2005
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
remote ArcA-Phosphorylated repressor ssbp1 4273931 4273945 -153.5 ggcgatcacaAACGGTTAATTATGACacaaattgac nd [APIORCISFBSCS], [BPP], [GEA] [4]
proximal ArcA-Phosphorylated repressor ssbp1 4273994 4274008 -90.5 attacccggaGTGTTGTGTAACAATGtctggccagg nd [APIORCISFBSCS], [BPP], [GEA] [4]
proximal ArcA-Phosphorylated repressor ssbp1 4274034 4274048 -50.5 tttcccggaaCCGAGGTCACAACATAgtaaaagcgc nd [APIORCISFBSCS], [BPP], [GEA] nd
proximal ArcA-Phosphorylated repressor ssbp1 4274077 4274091 -7.5 aatggtacaaTCGCGCGTTTACACTTattcagaacg nd [APIORCISFBSCS], [BPP], [GEA] [4]





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