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Name: | araFGH |
Gene(s): | araH, araG, araF Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [EXP-IEP-COREGULATION] Inferred through co-regulation |
Reference(s): | [1] Maciag A., et al., 2011 |
Promoter | |
Name: | araFp2 |
+1: | 1986148 |
Sigma Factor: | Sigma38 Sigmulon |
Distance from start of the gene: | 20 |
Sequence: |
aatgctttgttttccgattaatttaacgaatgtcattcgtttttgccctacacaaaacgaCactaaagctggagagaacca -10 +1 |
Evidence: |
[COMP-HINF] [EXP-IDA-HPT-TRANSCR-INIT-M-RACE-MAP] [EXP-IEP] |
Reference(s): | [1] Maciag A., et al., 2011 |
Name: | araFGH | ||||||||||
Synonym(s): | OP00138, araFG-w1867-araH | ||||||||||
Gene(s): | araH, araG, araF Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Evidence: | [EXP-IEP-COREGULATION] Inferred through co-regulation | ||||||||||
Reference(s): |
[1] Maciag A., et al., 2011 [2] Scripture JB., et al., 1987 |
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Promoter | |||||||||||
Name: | araFp3 | ||||||||||
+1: | 1986238 | ||||||||||
Sigma Factor: | Sigma38 Sigmulon | ||||||||||
Distance from start of the gene: | 110 | ||||||||||
Sequence: |
aattctgcgatgtgatattgctctcctatggagaattaatttctcgctaaaactatgtcaAcacagtcacttatcttttag -35 -10 +1 |
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Evidence: |
[COMP-AINF] [COMP-HINF] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] [EXP-IEP] |
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Reference(s): |
[3] Hendrickson W., et al., 1990 [4] Huerta AM., et al., 2003 [1] Maciag A., et al., 2011 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | AraC-α-L-arabinopyranose | activator | araFp3 | 1986300 | 1986316 | -70.0 | ccgctaaattTATGCACGTTCTCACTGtaattctgcg | nd | [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | nd | [3], [5] |
proximal | AraC-α-L-arabinopyranose | activator | araFp3 | 1986321 | 1986337 | -91.0 | ggctttccctTATGTCTTTTCCCGCTAaatttatgca | nd | [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION] | C | [3], [5] |
remote | AraC-α-L-arabinopyranose | activator | araFp3 | 1986375 | 1986391 | -145.0 | aggctaatctTATGGATTAATCTGCTGtgcattcgac | nd | [COMP-AINF-SIMILAR-TO-CONSENSUS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | nd | [3], [5] |
remote | AraC-α-L-arabinopyranose | activator | araFp3 | 1986396 | 1986412 | -166.0 | ccaaagacaaCAAGGATTTCCAGGCTAatcttatgga | nd | [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION] | C | [3], [5] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | CRP-cyclic-AMP | activator | araFp3 | 1986270 | 1986291 | -42.5 | tgtaattctgCGATGTGATATTGCTCTCCTATggagaattaa | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION] | C | [3], [6], [7] |
Name: | araFGH | ||||||||||
Synonym(s): | OP00138, araFG-w1867-araH | ||||||||||
Gene(s): | araH, araG, araF Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Evidence: | [EXP-IEP-COREGULATION] Inferred through co-regulation | ||||||||||
Reference(s): |
[1] Maciag A., et al., 2011 [2] Scripture JB., et al., 1987 |
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Promoter | |||||||||||
Name: | araFp1 | ||||||||||
+1: | 1986238 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 110 | ||||||||||
Sequence: |
aattctgcgatgtgatattgctctcctatggagaattaatttctcgctaaaactatgtcaAcacagtcacttatcttttag -35 -+1 |
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Evidence: |
[COMP-AINF] [COMP-HINF] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] [EXP-IEP] |
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Reference(s): |
[3] Hendrickson W., et al., 1990 [4] Huerta AM., et al., 2003 [1] Maciag A., et al., 2011 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | AraC-α-L-arabinopyranose | activator | araFp1 | 1986300 | 1986316 | -70.0 | ccgctaaattTATGCACGTTCTCACTGtaattctgcg | nd | [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | nd | [3], [5] |
proximal | AraC-α-L-arabinopyranose | activator | araFp1 | 1986321 | 1986337 | -91.0 | ggctttccctTATGTCTTTTCCCGCTAaatttatgca | nd | [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION] | C | [3], [5] |
remote | AraC-α-L-arabinopyranose | activator | araFp1 | 1986375 | 1986391 | -145.0 | aggctaatctTATGGATTAATCTGCTGtgcattcgac | nd | [COMP-AINF-SIMILAR-TO-CONSENSUS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | nd | [3], [5] |
remote | AraC-α-L-arabinopyranose | activator | araFp1 | 1986396 | 1986412 | -166.0 | ccaaagacaaCAAGGATTTCCAGGCTAatcttatgga | nd | [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION] | C | [3], [5] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | CRP-cyclic-AMP | activator | araFp1 | 1986270 | 1986291 | -42.5 | tgtaattctgCGATGTGATATTGCTCTCCTATggagaattaa | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION] | C | [3], [6], [7] |
Reference(s) |
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