![]() ![]() ![]() ![]() |
Name: | malXY | ||||||||||
Synonym(s): | OP00176 | ||||||||||
Gene(s): | malX, malY Genome Browser M3D Gene expression COLOMBOS | ||||||||||
Evidence: | [EXP-IDA-BOUNDARIES-DEFINED] Boundaries of transcription experimentally identified [EXP-IMP-POLAR-MUTATION] Polar mutation |
||||||||||
Reference(s): |
[1] Otsuka J., et al., 1996 [2] Reidl J., et al., 1991 |
||||||||||
Promoter | |||||||||||
Name: | malXp | ||||||||||
+1: | 1699313 | ||||||||||
Sigma Factor: | Sigma70 Sigmulon | ||||||||||
Distance from start of the gene: | 42 | ||||||||||
Sequence: |
tcgttgcgtaatgtgatttatgcctcactaaaatttgataaaacgttttatcttctcgcgCaatttactgaatccagattg -35 -10 +1 |
||||||||||
Evidence: |
[COMP] [COMP-AINF] [EXP] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
||||||||||
Reference(s): |
[3] Huerta AM., et al., 2003 [4] Lloyd GS., et al., 2008 [2] Reidl J., et al., 1991 |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
remote | CRP-cyclic-AMP | activator | malXp | 1699201 | 1699222 | -101.5 | tactccctgaTTATGTGACAGATAAAACGTTTtaccttttat | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION] | C | [4], [5] |
proximal | CRP-cyclic-AMP | activator | malXp | 1699261 | 1699282 | -41.5 | tatcgttgcgTAATGTGATTTATGCCTCACTAaaatttgata | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION] | C | [4], [6] |
Type | Transcription factor | Function | Promoter | Binding Sites | Growth Conditions | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | Reference(s) | |||
---|---|---|---|---|---|---|---|---|---|---|---|
LeftPos | RightPos | Central Rel-Pos | Sequence | ||||||||
proximal | MalI | repressor | malXp | 1699288 | 1699305 | -16.5 | cactaaaattTGATAAAACGTTTTATCTtctcgcgcaa | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IMP-SITE-MUTATION] | W | [6] |
Name: | malY |
Gene(s): | malY Genome Browser M3D Gene expression COLOMBOS |
Evidence: | [EXP-IEP] Inferred from expression pattern |
Reference(s): | [7] Li Z., et al., 2019 |
Promoter | |
Name: | malYp |
+1: | 1700840 |
Sigma Factor: | Sigma70 Sigmulon |
Distance from start of the gene: | 117 |
Sequence: |
cgtttgtctgtgaaagatatgtcgcttgttaatgtgcaggcactgaaggacaatcgggcaAttggcgtagtacaacttaat -35 -10 +1 |
Evidence: |
[COMP-AINF] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] [EXP-IEP-RNA-SEQ] [RS-EPT-CBR] |
Reference(s): |
[7] Li Z., et al., 2019 [8] Salgado H, et al., 2012 |
Reference(s) |
![]() |
---|---|