|
|
| Operon |  |
|---|---|
| Name: | pfkB |
| This page displays every known transcription unit of this operon and their known regulation. | |
| Name: | pfkB |
| Gene(s): | pfkB Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | The end of the pfkB transcription unit has not been proved. The pfkB gene studies only focused on obtaining its complete sequence and transcription start region, which are reported at Daldal F.,1983. The transcription of the pfkB gene is repressed during the first 24 h after the induction of nitrogen starvation Switzer A, Burchell L, McQuail J, Wigneshweraraj S,2020. The expression of the gene pfkB is enhanced under oxygen limitation Kawaguchi H, Miyagawa H, Nakamura-Tsuruta S, Takaya N, Ogino C, Kondo A,2019. |
| Evidence: | [EXP-IDA-BOUNDARIES-DEFINED] Boundaries of transcription experimentally identified |
| Reference(s): |
[1] Daldal F. 1984 [2] Daldal F. 1983 |
| Promoter | |
| Name: | pfkBp2 |
| +1: | 1806323 |
| Sigma Factor: | Sigma38 Sigmulon |
| Distance from start of the gene: | 47 |
| Sequence: |
atatttatctgcaaaattttaaataaagctccaataaatcatattgttaatttcttcactTtccgctgattcggtgccaga -35 -10 +1 |
| Evidence: |
[COMP-AINF] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
| Reference(s): |
[3] Huerta AM., et al., 2003 [4] Lacour S., et al., 2004 |
| Name: | pfkB |
| Gene(s): | pfkB Genome Browser M3D Gene expression COLOMBOS |
| Note(s): | The end of the pfkB transcription unit has not been proved. The pfkB gene studies only focused on obtaining its complete sequence and transcription start region, which are reported at Daldal F.,1983. The transcription of the pfkB gene is repressed during the first 24 h after the induction of nitrogen starvation Switzer A, Burchell L, McQuail J, Wigneshweraraj S,2020. The expression of the gene pfkB is enhanced under oxygen limitation Kawaguchi H, Miyagawa H, Nakamura-Tsuruta S, Takaya N, Ogino C, Kondo A,2019. |
| Evidence: | [EXP-IDA-TRANSCRIPT-LEN-DETERMINATION] Length of transcript experimentally determined |
| Reference(s): |
[1] Daldal F. 1984 [2] Daldal F. 1983 |
| Promoter | |
| Name: | pfkBp1 |
| +1: | 1806351 |
| Sigma Factor: | Sigma38 Sigmulon |
| Distance from start of the gene: | 19 |
| Sequence: |
ctccaataaatcatattgttaatttcttcactttccgctgattcggtgccagactgaaatCagcctataggaggaaatgat -35 -10 +1 |
| Evidence: |
[COMP-AINF] [COMP-HINF-POSITIONAL-IDENTIFICATION] [COMP-HINF-SIMILAR-TO-CONSENSUS] [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] |
| Reference(s): |
[1] Daldal F. 1984 [2] Daldal F. 1983 [3] Huerta AM., et al., 2003 [4] Lacour S., et al., 2004 |
| RNA cis-regulatory element | |
|---|
| Regulation, transcriptional elongation | |
| Attenuator type: | Translational |
| Strand: | forward |
| Structure type | Energy | LeftPos | RightPos | Sequence (RNA-strand) | |
|---|---|---|---|---|---|
| terminator | -13.2 | 1806323 | 1806363 | ttcttcacttTCCGCTGATTCGGTGCCAGACTGAAATCAGCCTATAGGAGgaaatgatgg |
| Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos" |
| Reference(s) |
|
|---|---|
[COMP-AINF] Inferred computationally without human oversight