RegulonDB RegulonDB 11.2: Operon Form
   

amn operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: amn
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: amn
Gene(s): amn   Genome Browser M3D Gene expression COLOMBOS
Evidence: [COMP-AINF] Inferred computationally without human oversight
Promoter
Name: amnp1
+1: 2055031
Distance from start of the gene: 30
Sequence: agatcatccgatcttcgccttacacttttgtttcacatttctgtgacatactatcggatgTgcggtaattgtatggaacag
Evidence: [COMP-HINF-POSITIONAL-IDENTIFICATION]
[EXP-IDA-TRANSCRIPTION-INIT-MAPPING]
Reference(s): [1] Leung HB., et al., 1989
TF binding sites (TFBSs)
[PhoB,+] Phrase
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal PhoB-phosphorylated activator amnp1 2054989 2055007 -33.0 cgatcttcgcCTTACACTTTTGTTTCACAtttctgtgac nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [2]


Evidence    

 [COMP-HINF-POSITIONAL-IDENTIFICATION] Human inference of promoter position

 [EXP-IDA-TRANSCRIPTION-INIT-MAPPING] Transcription initiation mapping

 [EXP-IEP-GENE-EXPRESSION-ANALYSIS] Gene expression analysis

 [COMP-AINF-SIMILAR-TO-CONSENSUS] Automated inference based on similarity to consensus sequences


Reference(s)    

 [1] Leung HB., Kvalnes-Krick KL., Meyer SL., deRiel JK., Schramm VL., 1989, Structure and regulation of the AMP nucleosidase gene (amn) from Escherichia coli., Biochemistry 28(22):8726-33

 [2] Baek JH., Lee SY., 2006, Novel gene members in the Pho regulon of Escherichia coli., FEMS Microbiol Lett 264(1):104-9

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