RegulonDB RegulonDB 10.9: Operon Form
   

pgi operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: pgi
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: pgi
Gene(s): pgi   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: pgip2
+1: 4233722
Sigma Factor: Sigma38 Sigmulon
Distance from start of the gene: 36
Sequence: acattacgctaacggcactaaaaccatcacatttttctgtgactggcgctacaatcttccAaagtcacaattctcaaaatc
                            -35              -10            +1                   
Evidence: [HIPP]
[HTTIM]
[ICWHO]
[TIM]
Reference(s): [1] Froman BE., et al., 1989
[2] Huerta AM., et al., 2003
[3] Olvera L., et al., 2009
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal SoxS activator pgip2 4233673 4233693 -39.5 cattacgctaACGGCACTAAAACCATCACATttttctgtga nd [APIORCISFBSCS], [GEA] [4], [5]


Transcription unit          
Name: pgi
Gene(s): pgi   Genome Browser M3D Gene expression COLOMBOS
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: pgip
+1: 4233722
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 36
Sequence: acattacgctaacggcactaaaaccatcacatttttctgtgactggcgctacaatcttccAaagtcacaattctcaaaatc
                          -35                     -10       +1                   
Note(s): The pgip promoter has been studied, along with other promoters, for use in synthetic biology and metabolic engineering. It appears to be stronger than the lac-inducible promoter 32413369.
Evidence: [HIPP]
[HTTIM]
[ICWHO]
[TIM]
Reference(s): [1] Froman BE., et al., 1989
[2] Huerta AM., et al., 2003
[3] Olvera L., et al., 2009
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal SoxS activator pgip 4233673 4233693 -39.5 cattacgctaACGGCACTAAAACCATCACATttttctgtga nd [APIORCISFBSCS], [GEA] [4], [5]





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