RegulonDB RegulonDB 10.9: Operon Form
   

aspC operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: aspC
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: aspC
Gene(s): aspC   Genome Browser M3D Gene expression COLOMBOS
Note(s): Under nitrogen-rich growth conditions, the expression of the icdA gene increased in mutants for two genes that encode two terminal oxidases, cyoA and cydB, and in mutants for two transcriptional regulators, Fnr and Fur. However, under nitrogen-limited growth conditions, gene expression was decreased in the cyoA and cydB and Fnr mutants Kumar R,2011
Evidence: [ICWHO] Inferred computationally without human oversight
Promoter
Name: aspCp
+1: 985743
Distance from start of the gene: 34
Sequence: agcctgcgttttcatcagtaatagttggaattttgtaaatctcccgttaccctgatagcgGacttcccttctgtaaccata
Evidence: [AIPP]
[RPF]
Reference(s): [1] Fotheringham IG., et al., 1986
[2] Staden R. 1984
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd FNR activator aspCp nd nd nd nd nd [BPP], [GEA], [IGI] [3]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd FNR repressor aspCp nd nd nd nd nd [BPP], [GEA], [IGI] [3]
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
nd Fur-Fe2+ repressor aspCp nd nd nd nd nd [BPP], [GEA], [IGI] [3]





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