RegulonDB RegulonDB 10.9: Operon Form

cdh operon and associated TUs in Escherichia coli K-12 genome

Name: cdh
This page displays every known transcription unit of this operon and their known regulation.

Transcription unit       
Name: cdh
Gene(s): cdh   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
Reference(s): [1] Icho T., et al., 1985
Name: cdhp
+1: 4109907
Distance from start of the gene: 23
Sequence: ccggtggtttctcgcgaccgggttttttatttgtcacgattttgcgttacccttgcatctCtttgaggtacagggaaaaaa
Evidence: [TIM]
Reference(s): [1] Icho T., et al., 1985
Type: rho-independent
Sequence: aggaaagtaaGTGCCGGATATGAAATCCGGCACctgtcagact
Reference(s): [1] Icho T., et al., 1985

RNA cis-regulatory element    
Regulation, transcriptional elongation  
Attenuator type: Transcriptional
Strand: forward
  Structure type Energy LeftPos RightPos Sequence (RNA-strand)
  terminator -16.0 4109843 4109878 ataattatcaAACCCGGTGGTTTCTCGCGACCGGGTTTTTTATTTgtcacgattt
  anti-terminator -3.9 4109832 4109858 atttccccagGATAATTATCAAACCCGGTGGTTTCTcgcgaccggg
  anti-anti-terminator -10.7 4109794 4109842 gctaacggcgGTACGTTCGATCAGATCAGCAAACGCTGATTTCCCCAGGATAATTATCaaacccggtg
Notes: "The provided "Sequence" is that of the RNA strand, i.e. U's are shown instead of T's and regulators on the reverse strand will appear as the reverse complement of the sequence delimited by LeftPos-RigtPos"